PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA38409

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 335aa MW: 37001.1 Da PI: 6.6129

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA38409	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00043	196	234	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Tp57577_TGAC_v2_mRNA38409 196 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 234 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.522	184	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-10	194	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.12E-6	194	238	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-7	194	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MMAGNPNWWN MHPPSLNIPP QYMLGSSSIP FNSLTENSEV PPQSWSQLLF TGVPGEEERL 60 GFNHFEPKNS ENWDVQILNP SSRVPIMDVI KHEVSQNENF YGQQEHHHHH EEFHPNNSGS 120 LGSSWSHMVP VSSPSSHVTS LSSDNNMLDF TYNKLDHSKN LLQDQTSECN SSTINGVNKK 180 ARVQPSSSSQ PPLKVRKEKL GDRITALHQL VSPFGKTDTA SVLLEAIGYI RFLQSQIEAL 240 SSPYLDTAAS KNMMRNQHSV HVERNSVFPE DPGQLLDDTG LKRKGAPIPN QNAGANKAKD 300 LRSRGLCLVP VSCTQHVGSE NGADYWAPAF GSGF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA38409

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT149545	0.0	BT149545.1 Medicago truncatula clone JCVI-FLMt-16P10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003597717.2	0.0	transcription factor bHLH68
Refseq	XP_024633254.1	0.0	transcription factor bHLH68
Swissprot	Q8S3D1	6e-75	BH068_ARATH; Transcription factor bHLH68
TrEMBL	G7IUP4	0.0	G7IUP4_MEDTR; BHLH transcription factor-like protein
STRING	AES67968	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	4e-77	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA38409

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]