PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA38406

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

HD-ZIP

Protein Properties

Length: 805aa MW: 89957.5 Da PI: 6.456

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA38406	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.5	3.5e-16	140	179	17	56
HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Tp57577_TGAC_v2_mRNA38406 140 RLFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 179 68**********************************9877 PP
2	START	203.3	1e-63	296	543	4	206
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG....... CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke....... 70 ++a++el+k+a+ +ep+W +s e++n+de++++f +++ +s+ea+r++gvv+++l++ v+ +ld Tp57577_TGAC_v2_mRNA38406 296 NQAMDELIKMATMDEPLWLRSLetgrEILNYDEYMKEFLVENSdngrpkRSIEASRDTGVVFADLPRIVQCFLDAIFivqflqk 379 689*********************************88888999************************99999999 PP CT-TT-S....EEEEEEEECTT........................EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEE CS START 71 qWdetla....kaetlevissg........................galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvi 125 qW+e+++ ka+t++ i++g lq+m+aelq+l+p+vp R+++fvRy++ql++++w+i Tp57577_TGAC_v2_mRNA38406 380 QWKEMFPclisKAATVDIICKGessnkngavqletinsqfsilycvLLLQQMFAELQMLTPMVPtREVYFVRYCKQLSGEKWAI 463 *******************************************99********************************* PP EEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 126 vdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vdvS+d +++ ++s+v+++++pSg++ie+ksngh+kv wveh +++++ +h+++r +v+sgla+ga++w atlq qce+ Tp57577_TGAC_v2_mRNA38406 464 VDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVLWVEHLECQKSAVHSMYRTIVNSGLAFGARHWIATLQLQCER 543 ******98.9***************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-21	89	179	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.36E-15	98	182	IPR009057	Homeodomain-like
SMART	SM00389	9.5E-12	107	185	IPR001356	Homeobox domain
CDD	cd00086	1.66E-13	112	179	No hit	No description
Pfam	PF00046	1.6E-13	140	179	IPR001356	Homeobox domain
PROSITE profile	PS50071	14.43	142	181	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	156	179	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	37.811	284	546	IPR002913	START domain
SuperFamily	SSF55961	8.1E-27	287	543	No hit	No description
CDD	cd08875	5.39E-102	289	542	No hit	No description
SMART	SM00234	9.7E-53	293	543	IPR002913	START domain
Pfam	PF01852	1.4E-49	295	543	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	7.0E-4	437	538	IPR023393	START-like domain
SuperFamily	SSF55961	6.59E-15	572	795	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009957	Biological Process	epidermal cell fate specification
GO:0010062	Biological Process	negative regulation of trichoblast fate specification
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence Send to blast
MCVVDMSNNP PPSSSRAKDF FPSPALSLSL AGIFRHGGLA AEGEGASTSN MEVEEGEEGS 60 TVGGDQRVEE ISSEYSGPTR SKSEDEFEGD EDDEGGGDGD NKQKKKKRKK YHRHTAEQIR 120 VMEACMLKNL MMNNVNKYCR LFKESPHPDE KQRQQLSKQL GLAPRQVKFW FQNRRTQIKA 180 IQERHENSLL KTEIEKLREK NKTLRETINK ACCPNCGVPN TNKDGAMPTE EQQLRIENVK 240 LKAEVEKLRA ALGKHASGTM SPSCSTSHDQ ENIKSSLDFY TGIFGLDESR IMDIVNQAMD 300 ELIKMATMDE PLWLRSLETG REILNYDEYM KEFLVENSDN GRPKRSIEAS RDTGVVFADL 360 PRIVQCFLDA IFIVQFLQKQ WKEMFPCLIS KAATVDIICK GESSNKNGAV QLETINSQFS 420 ILYCVLLLQQ MFAELQMLTP MVPTREVYFV RYCKQLSGEK WAIVDVSIDK VEDNIDASLV 480 KCRKRPSGCI IEDKSNGHCK VLWVEHLECQ KSAVHSMYRT IVNSGLAFGA RHWIATLQLQ 540 CERLVFFMAT NVPMKDSTGV ATLAGRKSIL KLAQRMTWSF CQAISASSFH TWTKLSSKTG 600 EDIRISSRKN LNDPGEPLGL ILCAVSSVWL PISPNVLFDF LRDEARRTEW DIMSSGGEVQ 660 SIANLAKGQD RGNAVTIQTI KSKENNMWIL QDSCTNSYES MVVYAPVDIT GIQSVMTGCD 720 SSNLAILPSG FSIIPDGLES RPMVITSRQQ EKNTDGGSLF TIAFQILTNS SPTAKLTMES 780 VDSVNSLVSC TLRHIRTSLN CEDG*

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence Send to blast

MCVVDMSNNP PPSSSRAKDF FPSPALSLSL AGIFRHGGLA AEGEGASTSN MEVEEGEEGS  60
TVGGDQRVEE ISSEYSGPTR SKSEDEFEGD EDDEGGGDGD NKQKKKKRKK YHRHTAEQIR  120
VMEACMLKNL MMNNVNKYCR LFKESPHPDE KQRQQLSKQL GLAPRQVKFW FQNRRTQIKA  180
IQERHENSLL KTEIEKLREK NKTLRETINK ACCPNCGVPN TNKDGAMPTE EQQLRIENVK  240
LKAEVEKLRA ALGKHASGTM SPSCSTSHDQ ENIKSSLDFY TGIFGLDESR IMDIVNQAMD  300
ELIKMATMDE PLWLRSLETG REILNYDEYM KEFLVENSDN GRPKRSIEAS RDTGVVFADL  360
PRIVQCFLDA IFIVQFLQKQ WKEMFPCLIS KAATVDIICK GESSNKNGAV QLETINSQFS  420
ILYCVLLLQQ MFAELQMLTP MVPTREVYFV RYCKQLSGEK WAIVDVSIDK VEDNIDASLV  480
KCRKRPSGCI IEDKSNGHCK VLWVEHLECQ KSAVHSMYRT IVNSGLAFGA RHWIATLQLQ  540
CERLVFFMAT NVPMKDSTGV ATLAGRKSIL KLAQRMTWSF CQAISASSFH TWTKLSSKTG  600
EDIRISSRKN LNDPGEPLGL ILCAVSSVWL PISPNVLFDF LRDEARRTEW DIMSSGGEVQ  660
SIANLAKGQD RGNAVTIQTI KSKENNMWIL QDSCTNSYES MVVYAPVDIT GIQSVMTGCD  720
SSNLAILPSG FSIIPDGLES RPMVITSRQQ EKNTDGGSLF TIAFQILTNS SPTAKLTMES  780
VDSVNSLVSC TLRHIRTSLN CEDG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	108	KKKKRK
2	103	109	KKKKRKK
3	105	109	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA38406

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003597736.1	0.0	homeobox-leucine zipper protein GLABRA 2
Swissprot	P46607	0.0	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	G7IUR3	0.0	G7IUR3_MEDTR; Homeobox leucine zipper protein
STRING	AES67987	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4714	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA38406

Publications ? help Back to Top
Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]