PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA38345

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

TCP

Protein Properties

Length: 447aa MW: 48157.8 Da PI: 9.6667

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA38345	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.9	2.9e-41	60	184	1	130
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 +a+k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s Tp57577_TGAC_v2_mRNA38345 60 PAPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGS 143 589*******************************************************************99977777777777 PP TCP 84 nsssg..............kaaksaakskksqksaasalnlakesrakararare.rtrekm 130 + s++ + a+ a+ r ra+ rt +m Tp57577_TGAC_v2_mRNA38345 144 TMSAPshyfrgnyfnpssfS--------------------TAAAAAAQLRNRAEWdRT-MNM 184 44444444444444333331....................222223333333333111.111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.6E-40	66	202	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.683	67	121	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MELEGDHQNN GIRSRPNFPL QLLEKKDNNI LDVSEEQQLC SKTANDGSGT IITSDSQKKP 60 APKRASTKDR HTKVDGRGRR IRMPAACAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA 120 ATGTGTIPAN FTSLNISLRS SGSTMSAPSH YFRGNYFNPS SFSTAAAAAA QLRNRAEWDR 180 TMNMNMNVTA DDSRRNNNMM ENPSSLSAIL NFNNVQNAIL QAKQELREEX XXXXXXXXXX 240 XXXXXXXXXX XXQNAILQAK QELREENASG GGGGGGGFDL LGSDSDGSIG RKRRSEQELL 300 SQNMGSYLLQ SNVGSLPSSH ASNTAAFWMV TGNGNQSVNG GGNGNDPIWA IPSVGNNGLY 360 RGAMPSNGIH FMNFASPMNL MPGSQLGSGI VGGGGGGGTG IMAESNLSML SAMNAYRQIQ 420 TNGMSESPGQ HHGXXXXXXX XRRRRR*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MELEGDHQNN GIRSRPNFPL QLLEKKDNNI LDVSEEQQLC SKTANDGSGT IITSDSQKKP  60
APKRASTKDR HTKVDGRGRR IRMPAACAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA  120
ATGTGTIPAN FTSLNISLRS SGSTMSAPSH YFRGNYFNPS SFSTAAAAAA QLRNRAEWDR  180
TMNMNMNVTA DDSRRNNNMM ENPSSLSAIL NFNNVQNAIL QAKQELREEX XXXXXXXXXX  240
XXXXXXXXXX XXQNAILQAK QELREENASG GGGGGGGFDL LGSDSDGSIG RKRRSEQELL  300
SQNMGSYLLQ SNVGSLPSSH ASNTAAFWMV TGNGNQSVNG GGNGNDPIWA IPSVGNNGLY  360
RGAMPSNGIH FMNFASPMNL MPGSQLGSGI VGGGGGGGTG IMAESNLSML SAMNAYRQIQ  420
TNGMSESPGQ HHGXXXXXXX XRRRRR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	387	398	SGIVGGGGGGGT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA38345

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP016157	0.0	FP016157.1 Medicago truncatula chromosome 5 clone mth4-11o22, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003613691.1	0.0	transcription factor TCP15
TrEMBL	A0A2Z6PVP9	0.0	A0A2Z6PVP9_TRISU; Uncharacterized protein
STRING	AES96649	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	3e-51	TCP family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA38345