PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA38183 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ARR-B | ||||||||
Protein Properties | Length: 619aa MW: 68589 Da PI: 6.8234 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.2 | 3.8e-28 | 193 | 246 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl Tp57577_TGAC_v2_mRNA38183 193 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKKILELMNVPGLTRENVASHLQKFRL 246 79*******************.********************************8 PP | |||||||
2 | Response_reg | 71.9 | 2.7e-24 | 17 | 125 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 vl+vdD+ + +++++++ + +y +v++++++++al++l+e++ +D++l D+ mp+mdG++ll++ e +lp+i+++ + Tp57577_TGAC_v2_mRNA38183 17 VLVVDDDVTTLKIIERMSVRCHY-RVTTCSEATAALKILRERKgcFDVVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSVDDR 98 89*********************.*******************************************6644.8*********** PP HHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 83 eedalealkaGakdflsKpfdpeelvk 109 +++ + ++ Ga d++ Kp+ eel++ Tp57577_TGAC_v2_mRNA38183 99 TSTVMKGIRHGACDYFIKPVRLEELRN 125 *************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 4.5E-149 | 1 | 615 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.57E-32 | 14 | 137 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 9.9E-40 | 14 | 148 | No hit | No description |
SMART | SM00448 | 1.6E-28 | 15 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 39.97 | 16 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.2E-20 | 17 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.67E-25 | 18 | 131 | No hit | No description |
PROSITE profile | PS51294 | 10.81 | 190 | 249 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-30 | 190 | 251 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.02E-19 | 190 | 250 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-24 | 193 | 246 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 195 | 244 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MEQSSMNSGE FPAGLRVLVV DDDVTTLKII ERMSVRCHYR VTTCSEATAA LKILRERKGC 60 FDVVLSDVHM PDMDGYKLLE HVGLEMDLPV IMMSVDDRTS TVMKGIRHGA CDYFIKPVRL 120 EELRNIWQHV ARKFLNESKE HDNSSSREDN DRNNISSAAG ATKGIVKEQK KRSNLKDEED 180 VELENDDPST SKKPRVVWSV ELHQQFVSAV NQLGLDKAVP KKILELMNVP GLTRENVASH 240 LQKFRLYLKR LSGVAQQQNE MLNTVPGTIE SKLAAAERYI QTVAASGYVS PETLAALHAE 300 LLGHPVTNIV PTVDRTTLMQ AFEQEPKHSG ADDHDVASGQ PLAKYPSNIV NNFPQSILKV 360 DNSSLGYGAW PPSDTLGSVS RGSLGVPNNN MVIDILQHHQ KHQHQQKQQK SPIHDQNQSI 420 NVQPSCLVVP AQSSDTFQEV KSVASVNKDC SFSRNAIIDY SQQSQKSNIS SSTSQYLGRD 480 TKSTSISPLM SSFSVGSSNS NIQQIQNSTS TFGAARPLPS LLPMTFRQVP YDIKSSDSLD 540 QVCLRNPRFV GKGNHISSFE NEIESSASDF SHMKVFVACN GNTVKEEPKE EPNFIRYSNV 600 NHPVLYNYPS HDHSSAST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-21 | 189 | 252 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA38183 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 2e-55 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498241.1 | 0.0 | two-component response regulator ORR21 | ||||
Refseq | XP_004498242.1 | 0.0 | two-component response regulator ORR21 | ||||
Swissprot | A2XE31 | 1e-130 | ORR21_ORYSI; Two-component response regulator ORR21 | ||||
TrEMBL | A0A2K3MNL1 | 0.0 | A0A2K3MNL1_TRIPR; Two-component response regulator | ||||
STRING | XP_004498241.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11808 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 4e-99 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA38183 |