PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3810
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 418aa    MW: 46806.2 Da    PI: 8.9945
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3810genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.7e-1759118155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Tp57577_TGAC_v2_mRNA3810  59 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 118
                               57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-1359118IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-1759127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-1560127IPR001471AP2/ERF domain
SMARTSM003801.9E-2560132IPR001471AP2/ERF domain
PROSITE profilePS5103220.12660126IPR001471AP2/ERF domain
PRINTSPR003674.1E-56172IPR001471AP2/ERF domain
PRINTSPR003674.1E-5108128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MASSSSDHGK SAENSEALAV ANDQLLLYRG LKKAKKERGC TAKERISKMP PCAAGKRSSI  60
YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQVYLGAYD DEEAAARAYD LAALKYWGPG  120
TLINFPVTDY TRDLEEMQNV SREEYLASLR RKSSGFSRGL AKYRGLSRRW EPYGRLTGSD  180
YFSSMHYGTG DDSAAESEYV SGFCIERKVD LTNHIKWWGS NKNRQPDAGT RLSEEKKHGF  240
AGGDIYSELK TLEQKVQPTE PYKLPELGRL HNEKKHKSSS MSALSILSQS AAYKSMQEKA  300
AKRQESSTDN DENENKNIVN ELDRGKAVEK PSNHDGGNDR LDIAMGMSGA LSLQRNVYPL  360
TPFLSAPLLT TYNTVDPLVD PALWTSLIPM LPASLSRPAE VTKTETDSTY TIYQPEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3810
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493481.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-171AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2Z6N2290.0A0A2Z6N229_TRISU; Uncharacterized protein
STRINGXP_004493481.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-166AP2 family protein