PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37984
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 538aa    MW: 60213.8 Da    PI: 5.9272
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37984genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.11e-1251745361373
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++lL++cA+a+++++ +  + l++r ++ +s +g+p+qRl ay++ A  + ++       +al+++e +    +e l++++l+
  Tp57577_TGAC_v2_mRNA37984 174 LKQLLIACAKAMAENNIQDFDLLIERARNDVSINGEPIQRLGAYMVXASGNSIY-------HALNCREPE---GEELLTYMQLL 247
                                689******************************************999666665.......59******9...9********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                +e++P+lkf++++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le +g+rLa
  Tp57577_TGAC_v2_mRNA37984 248 FEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGDGLEVVGKRLA 331
                                ******************************************************************999999************ PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                 + +++++p+ef+  +     d++ ++L+++ gEalaVn+ lqlh++ desv+++++rd +L+lvksl Pkvv++veqe+++n+
  Tp57577_TGAC_v2_mRNA37984 332 MMSKKFNIPVEFHG-IPVFAPDVTRDMLDIRVGEALAVNFPLQLHHTADESVDVNNPRDGLLRLVKSLAPKVVTLVEQESNTNT 414
                                **************.5888999************************************************************** PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                ++F++rf+e+l+yy a+f+s++++l+r+s+eri+vE+++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF++ pls++++
  Tp57577_TGAC_v2_mRNA37984 415 TPFFNRFIETLDYYLAIFESIDVTLSRDSKERINVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVN 498
                                ************************************************************************************ PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                + +++llr ++ + y++ e++g+++lgWk+r+L+s+SaW
  Tp57577_TGAC_v2_mRNA37984 499 SVIRSLLRCYS-EHYTLVEKDGAMLLGWKNRNLISASAW 536
                                *******9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.076148518IPR005202Transcription factor GRAS
PfamPF035143.6E-123174536IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MDSQQLYSYS MTTGLPYMQS FPTIPSLQNG LFGSLKVGVG NSPDSPFSSH FDSDTLSAFS  60
DSHEHYNSGE ILSGISSSYN SSLETNHYLQ RSVSSVDSLK ESLQLYSARN SSLPTNHKIR  120
HALLELENAL MAPDDNEPSH VTNNTRQSNE VVHVEKRRKL EVESSLQEFP SGDLKQLLIA  180
CAKAMAENNI QDFDLLIERA RNDVSINGEP IQRLGAYMVX ASGNSIYHAL NCREPEGEEL  240
LTYMQLLFEI CPYLKFGYMA ANGAIAEACR NEDRIHIIDF QIAQGTQWMT LLQALAARPG  300
GAPHVRITGI DDPVSKYARG DGLEVVGKRL AMMSKKFNIP VEFHGIPVFA PDVTRDMLDI  360
RVGEALAVNF PLQLHHTADE SVDVNNPRDG LLRLVKSLAP KVVTLVEQES NTNTTPFFNR  420
FIETLDYYLA IFESIDVTLS RDSKERINVE QHCLARDIVN VIACEGKERV ERHELFGKWK  480
SRLTMAGFRQ CPLSSYVNSV IRSLLRCYSE HYTLVEKDGA MLLGWKNRNL ISASAWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-601585363378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA37984
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1920720.0AC192072.2 Medicago truncatula chromosome 2 BAC clone mth2-25f19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596568.10.0scarecrow-like protein 21
RefseqXP_024632410.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2K3MU020.0A0A2K3MU02_TRIPR; Chitin-inducible gibberellin-responsive protein 1-like
STRINGAES668190.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-172scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]