PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA37902 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Trihelix | ||||||||
Protein Properties | Length: 240aa MW: 27080.2 Da PI: 4.5232 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 104.8 | 6.2e-33 | 62 | 147 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rW+k ev aLi++r+ ++ +++++ k+plWee+s+ m+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+q Tp57577_TGAC_v2_mRNA37902 62 RWPKTEVEALIKLRTTLDMKYQENGPKGPLWEEISSLMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQ 144 8*********************************************************************8.99********** PP trihelix 85 lea 87 l+a Tp57577_TGAC_v2_mRNA37902 145 LDA 147 *85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.2E-5 | 59 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 60 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.91E-5 | 61 | 121 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 3.63E-28 | 61 | 126 | No hit | No description |
PROSITE profile | PS50090 | 7.445 | 61 | 119 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 4.0E-23 | 61 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MATPQVQTPA PLPIPIPAPV IPQVSPLPQQ QAQVQQQQVT NMEIVKSDNN GGESVMQASS 60 SRWPKTEVEA LIKLRTTLDM KYQENGPKGP LWEEISSLMK NLGYNRNAKR CKEKWENINK 120 YFKKVKESNK KRPEDSKTCP YFHQLDALYR EKNKGEGAAV VRPEGTMMAP LMVQPEQQWP 180 PQQPPPTTGA DVTMEDAEKD RPHHDEEAFY DDDDGDDEEE EDEGSDNYEV VANKPPPPQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA37902 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013451833.1 | 3e-93 | trihelix transcription factor GTL1 | ||||
Swissprot | Q39117 | 3e-52 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A2K3PI53 | 1e-172 | A0A2K3PI53_TRIPR; Trihelix transcription factor GT-2-like protein | ||||
STRING | AES85068 | 1e-92 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-60 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA37902 |