PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA37856

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Trihelix

Protein Properties

Length: 380aa MW: 42034.9 Da PI: 9.4579

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA37856	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.8	3.5e-29	59	142	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rW++qe+laL+++r++m+ ++r+++ k+plW+evs+km++ g++r++k+Ckek+en+ k++k++keg+++++ + +t+++fdq Tp57577_TGAC_v2_mRNA37856 59 RWPRQETLALLKIRSDMDVAFRDASVKGPLWDEVSRKMADLGYQRNSKKCKEKFENVYKYHKRTKEGRGGKS--DGKTYRFFDQ 140 8******************************************************************964..5557**** PP trihelix 85 le 86 l+ Tp57577_TGAC_v2_mRNA37856 141 LQ 142 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-18	58	144	No hit	No description
CDD	cd12203	1.34E-25	58	123	No hit	No description
PROSITE profile	PS50090	6.69	58	116	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MLGDSAVLGT GGGSSGDGGA YHDGGETVAG GGGSISGDDE RGGGSRNEEG VDRSFGGNRW 60 PRQETLALLK IRSDMDVAFR DASVKGPLWD EVSRKMADLG YQRNSKKCKE KFENVYKYHK 120 RTKEGRGGKS DGKTYRFFDQ LQALENNPSI QSPKPQQLNT TPSQSSTPTT TAPLLLPPPL 180 LNSTPSIALP TPPTTTVPST TTLSIPMSYT QSNPTNFPPM PIPPPTNTNN PLPQITITPP 240 PSSFPNISAD FFSNSSSSST SSEETTTMEG GSNRRKRKRK WKDFYERIMK EVLQKQEELH 300 KRFLEAIEKR ERERCAREEA WRAQEMQRIN REREILAHER SIAASKDAAV MAFLQKIAEQ 360 QEQQNIVPPP LNNNTVVPQQ

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MLGDSAVLGT GGGSSGDGGA YHDGGETVAG GGGSISGDDE RGGGSRNEEG VDRSFGGNRW  60
PRQETLALLK IRSDMDVAFR DASVKGPLWD EVSRKMADLG YQRNSKKCKE KFENVYKYHK  120
RTKEGRGGKS DGKTYRFFDQ LQALENNPSI QSPKPQQLNT TPSQSSTPTT TAPLLLPPPL  180
LNSTPSIALP TPPTTTVPST TTLSIPMSYT QSNPTNFPPM PIPPPTNTNN PLPQITITPP  240
PSSFPNISAD FFSNSSSSST SSEETTTMEG GSNRRKRKRK WKDFYERIMK EVLQKQEELH  300
KRFLEAIEKR ERERCAREEA WRAQEMQRIN REREILAHER SIAASKDAAV MAFLQKIAEQ  360
QEQQNIVPPP LNNNTVVPQQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	273	278	RRKRKR
2	273	279	RRKRKRK
3	274	279	RKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA37856

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB052729	1e-165	AB052729.1 Pisum sativum mRNA for DNA-binding protein DF1, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013451833.1	1e-146	trihelix transcription factor GTL1
Swissprot	Q39117	4e-86	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	G8A0T0	1e-145	G8A0T0_MEDTR; Myb/SANT-like DNA-binding domain protein
STRING	AES85068	1e-145	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	6e-54	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA37856