PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA37789 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 129aa MW: 14704.3 Da PI: 7.5026 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43.9 | 7.6e-14 | 56 | 123 | 2 | 65 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkak 65 fY++YA+ vGFsv s ++k rng ++++vCskeg+ +++k+ + + r+r+ tr+gCk k Tp57577_TGAC_v2_mRNA37789 56 FYQNYAHAVGFSVLASLETKD-RNGVKHWKHYVCSKEGYLPNKTKDkeqsePNIKTRRRSLTRVGCKEK 123 **************9988887.9999************98777777445444556669999*****966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.2E-12 | 56 | 124 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MEELQSPDPK FASYHNSESS RSPVHSENEC VPNDRDDDLK PKVGQIFDTL EECQTFYQNY 60 AHAVGFSVLA SLETKDRNGV KHWKHYVCSK EGYLPNKTKD KEQSEPNIKT RRRSLTRVGC 120 KEKLLSNG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA37789 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024634877.1 | 3e-34 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A072U9Z0 | 3e-35 | A0A072U9Z0_MEDTR; FAR1 DNA-binding domain protein | ||||
STRING | AES89813 | 5e-33 | (Medicago truncatula) | ||||
STRING | AES98791 | 1e-32 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15907 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-10 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA37789 |