PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA37656

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 177aa MW: 19867.2 Da PI: 7.9899

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA37656	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00036	119	146	5	32
HHHHHHHHHHHHHHHHHHHHCTSCCC.. CS HLH 5 hnerErrRRdriNsafeeLrellPkask 32 + ++Er+RR ++ + f eL +P + k Tp57577_TGAC_v2_mRNA37656 119 KIMVERKRRLELAHMFIELSATIPRLKK 146 6799********************9744 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.5E-4	117	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.28E-5	118	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MDIENWLEMC QEEDHLGDYM VHQLSLEAPA MAGAATENTL QEICHIPTVV SSEMTKQLPH 60 PSTSSKTCTI SFDNSAVIPL KPSVISSKPP RPPCSAKKRT SEKLKSSEAK AITKEGEKKI 120 MVERKRRLEL AHMFIELSAT IPRLKKVIHT INFNKLYLLD LSFDLIFSKQ ILLEAY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	127	ERKRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA37656

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3P9K1	1e-94	A0A2K3P9K1_TRIPR; Uncharacterized protein
STRING	AES68218	4e-23	(Medicago truncatula)

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA37656