PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3761
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 387aa    MW: 44787.1 Da    PI: 6.2766
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3761genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.15.8e-56291581129
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgy 82 
                               +ppGfrFhPtdeelv++yL+kk+++++++l +vik+vd+yk+ePwdL++  ++ + e++ewyfFs++dkky+tg+r+nrat++g+
  Tp57577_TGAC_v2_mRNA3761  29 VPPGFRFHPTDEELVDYYLRKKIASRRIDL-DVIKDVDLYKIEPWDLQElcRIGTeEQNEWYFFSHKDKKYPTGTRTNRATAAGF 112
                               69****************************.9***************954555442556************************** PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                               Wkatg+dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  Tp57577_TGAC_v2_mRNA3761 113 WKATGRDKAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 158
                               ************.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-6124178IPR003441NAC domain
PROSITE profilePS5100560.17929178IPR003441NAC domain
PfamPF023651.1E-2830157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGNKLVGITM SSNHLTHKRE ENMNTFSHVP PGFRFHPTDE ELVDYYLRKK IASRRIDLDV  60
IKDVDLYKIE PWDLQELCRI GTEEQNEWYF FSHKDKKYPT GTRTNRATAA GFWKATGRDK  120
AIYSKHDLIG MRKTLVFYKG RAPNGQKSDW IMHEYRLETD ENGAPQEEGW VVCRVFKKRV  180
TTTMRKMNEH DSPCWYDDQV SFMQDMESPN QTSQSNLIYQ QLPYPCKKEL DNLPYQNLPH  240
EHFLNLPLLE SPKLLQSSSN ITSNPIVTTT TYGTIDHANS MLPSSSMLLQ EEQILNPNQQ  300
NFHAMYGTNS NIDQQGVVDE QVTDWRVLDK FVASQLSQDQ DASKDNNNTS NIFHGNVQLR  360
NLEKQEMVPH ENASTSNSNC PIDLWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-51151791169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3761
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455347.10.0NAC domain-containing protein 7
SwissprotQ9FWX21e-141NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A072UK040.0A0A072UK04_MEDTR; Putative transcription factor NAM family
STRINGXP_007131341.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-123NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]