PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA37596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 208aa MW: 23566.6 Da PI: 3.914 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 49.3 | 1.6e-15 | 132 | 200 | 1 | 69 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvk 69 +fY +Y+k+ GFsvrks+ ks +ge ++tf Cs g+re++ + ++++rr+r etr+gC ak++v+ Tp57577_TGAC_v2_mRNA37596 132 QFYTTYSKMNGFSVRKSSVVKS-SKGELLQQTFICSSAGYRENKGLNvDNRKRRERCETRCGCAAKFRVH 200 6*******************99.7788****************99997889999************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-13 | 132 | 200 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MSMNEQVEET TYYSEGSCEV ELEGSCEDSD GVENEDNNRQ EDPEHINEDV DESEDGDDSS 60 EENFLEQNSE IGDDNCGDYV DSCXXXXXXX XXXXEEEIVI DDLDDILKID MKNIVSNDVS 120 RYSFSNLEVA YQFYTTYSKM NGFSVRKSSV VKSSKGELLQ QTFICSSAGY RENKGLNVDN 180 RKRRERCETR CGCAAKFRVH IDIASASG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA37596 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024634529.1 | 1e-37 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2Z6PEJ1 | 5e-38 | A0A2Z6PEJ1_TRISU; Uncharacterized protein | ||||
STRING | GLYMA10G23966.1 | 8e-27 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA37596 |