PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37469
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 241aa    MW: 27454.2 Da    PI: 8.7134
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37469genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.31.7e-20596191
                       FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84
                               +fY eYA+ +GFs rk+  + +  +g + +r++vCs++g+r++++ + te++r++r  +rt+C a+++ ++++ +g++ v  +   
  Tp57577_TGAC_v2_mRNA37469  5 EFYVEYARCLGFSARKDVRRVT-AEGVVHTRQMVCSRQGERAKKNIErTERSRQPRGLSRTSCVAMIRFHLNNsSGTYGVVCFMPV 89
                               6**************9986666.9999*************99988765899999******************99************ PP

                       FAR1 85 HnHelap 91
                               HnH+l+p
  Tp57577_TGAC_v2_mRNA37469 90 HNHPLTP 96
                               ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-18596IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
EKAEEFYVEY ARCLGFSARK DVRRVTAEGV VHTRQMVCSR QGERAKKNIE RTERSRQPRG  60
LSRTSCVAMI RFHLNNSSGT YGVVCFMPVH NHPLTPSTHV HLIPKYRGLN EADKNFVDGL  120
HSYGVRSCHI LGYLMGQKGG HAGLGFCKKD LYNYITRSGK AKMEDVGDAY SALCDIQTRT  180
ENDHLFYCKF TLDDMGHLNN LFWCDGASRV DYSCFGEVIA FDATYKKNKY DRPLVVFCGY  240
N
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA37469
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029126074.11e-76protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3KME61e-113A0A2K3KME6_TRIPR; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-31FAR1-related sequence 5