PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA37469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 241aa MW: 27454.2 Da PI: 8.7134 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.3 | 1.7e-20 | 5 | 96 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fY eYA+ +GFs rk+ + + +g + +r++vCs++g+r++++ + te++r++r +rt+C a+++ ++++ +g++ v + Tp57577_TGAC_v2_mRNA37469 5 EFYVEYARCLGFSARKDVRRVT-AEGVVHTRQMVCSRQGERAKKNIErTERSRQPRGLSRTSCVAMIRFHLNNsSGTYGVVCFMPV 89 6**************9986666.9999*************99988765899999******************99************ PP FAR1 85 HnHelap 91 HnH+l+p Tp57577_TGAC_v2_mRNA37469 90 HNHPLTP 96 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-18 | 5 | 96 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
EKAEEFYVEY ARCLGFSARK DVRRVTAEGV VHTRQMVCSR QGERAKKNIE RTERSRQPRG 60 LSRTSCVAMI RFHLNNSSGT YGVVCFMPVH NHPLTPSTHV HLIPKYRGLN EADKNFVDGL 120 HSYGVRSCHI LGYLMGQKGG HAGLGFCKKD LYNYITRSGK AKMEDVGDAY SALCDIQTRT 180 ENDHLFYCKF TLDDMGHLNN LFWCDGASRV DYSCFGEVIA FDATYKKNKY DRPLVVFCGY 240 N |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA37469 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029126074.1 | 1e-76 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2K3KME6 | 1e-113 | A0A2K3KME6_TRIPR; Uncharacterized protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-31 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA37469 |