PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37301
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 316aa    MW: 35025.4 Da    PI: 6.7275
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37301genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30183241259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+++ +++++tY+g+Hnh+
  Tp57577_TGAC_v2_mRNA37301 183 TDLWAWRKYGQKPIKGSPYPRNYYRCSSSkGCTARKQVERSNTEADMFIVTYTGDHNHP 241
                                699************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-30172243IPR003657WRKY domain
PROSITE profilePS5081132.914177243IPR003657WRKY domain
SuperFamilySSF1182905.62E-26177243IPR003657WRKY domain
SMARTSM007741.7E-36182242IPR003657WRKY domain
PfamPF031061.1E-25184241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAEDWDLFAI VRSCQSTTNT STTTTNSTIP SSINSTSNLK VELEYDAFAF PNIVQPITNE  60
VQGLNQLFTS FNPTTNPNTT IITSGYGINP NSPNIARCIG QHHNIAPTTS SSIWPNFVQE  120
ASTSSFNKFH NQQLQQHNHH LQVIQKQEFH VPQSTQPQTP RSRKRKSQQG KMVCHVTADN  180
LSTDLWAWRK YGQKPIKGSP YPRNYYRCSS SKGCTARKQV ERSNTEADMF IVTYTGDHNH  240
PRPTHRNSLA GSTRTKSPAI QPPTSISCQP NTATSCSSSL APNSFGEEEE DVDMEIETDE  300
EGEDGCDIPQ SNNGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-211842441880Disease resistance protein RRS1
5w3x_D2e-211842441880Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA37301
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592183.21e-150probable WRKY transcription factor 27
TrEMBLA0A2K3P2A61e-174A0A2K3P2A6_TRIPR; WRKY transcription factor 22-like protein
STRINGAES624341e-151(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-55WRKY DNA-binding protein 27