PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA37271 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 186aa MW: 21116.8 Da PI: 4.2844 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.7 | 5.4e-25 | 86 | 176 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 +fY+ YA++ GFs+rksk ++ +ge ++tfvCs eg+re++ + ++++r++r etr+gC+ak++v+ ++ +g+w+vt ++ Tp57577_TGAC_v2_mRNA37271 86 QFYCWYARMNGFSIRKSKVGRN-SKGEKLQQTFVCSSEGYREDKGLNtESQKREPRRETRCGCEAKFRVHINTlSGRWYVTIFS 168 6*****************9999.67779***************998856788889***************************** PP FAR1 83 leHnHela 90 +HnH+l Tp57577_TGAC_v2_mRNA37271 169 DKHNHNLL 176 *****996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.8E-23 | 86 | 176 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
YEDEHEGNGD EDGSGDDSGG EYRDPSGDGD GDGSEYSSSE ESDENNSTED EITINSLTDI 60 LKIDMKNISI DDVSMYDFCD LEVAYQFYCW YARMNGFSIR KSKVGRNSKG EKLQQTFVCS 120 SEGYREDKGL NTESQKREPR RETRCGCEAK FRVHINTLSG RWYVTIFSDK HNHNLLEEKY 180 CSLLP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA37271 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024630796.1 | 3e-49 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2Z6PEJ1 | 4e-56 | A0A2Z6PEJ1_TRISU; Uncharacterized protein | ||||
STRING | GLYMA10G23966.1 | 6e-39 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 8e-16 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA37271 |