PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA37250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | GRAS | ||||||||
Protein Properties | Length: 81aa MW: 9565.16 Da PI: 9.9206 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 35.8 | 1.1e-11 | 16 | 64 | 265 | 315 |
GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 s+lfd+l++++ r+ er+k+E ll ++i+n++aceg + +erhe++ W Tp57577_TGAC_v2_mRNA37250 16 SSLFDCLDSTAMRTFVERQKLESILLWKQIKNIIACEGGDVKERHEKV--W 64 79********************************************64..4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 3.8E-9 | 16 | 64 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MISISYRVLI DNWELSSLFD CLDSTAMRTF VERQKLESIL LWKQIKNIIA CEGGDVKERH 60 EKVWKSIRRL FSVSAWSFRR * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA37250 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007149009.1 | 5e-19 | hypothetical protein PHAVU_005G032900g | ||||
TrEMBL | A0A371DYV1 | 2e-18 | A0A371DYV1_MUCPR; Scarecrow-like protein 3 (Fragment) | ||||
STRING | XP_007149009.1 | 2e-18 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 6e-13 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA37250 |