PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37240
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SRS
Protein Properties Length: 318aa    MW: 34390.7 Da    PI: 8.4913
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37240genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7021822.4e-561132756154
                     DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel.kskkqsals 87 
                                + C dCGn+akkdC+++RCRtCCk rgfdC+thvkstWvpa+ rr+r+  la +  ++      ++ +kr+r l +s++++a+s
  Tp57577_TGAC_v2_mRNA37240 113 KVCLDCGNRAKKDCSFKRCRTCCKGRGFDCSTHVKSTWVPASLRRDRKMVLAETGYSDGGGGgVSSGTKRQRILvSSSHNAATS 196
                                57*********************************************8888877665555443788888888874222333333 PP

                     DUF702  88 stkls.saeskkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                +++ s  a+ + +l+++s           lP+ v+++avf+c rvs++ +ge+elaY ++v+i+GhvfkG+LydqG+++
  Tp57577_TGAC_v2_mRNA37240 197 HSSSSiAATRSLSLDITSschqdarfkqsLPRYVRAPAVFKCHRVSAIGNGEDELAYLATVNISGHVFKGFLYDQGIDA 275
                                32222033344455555578889999999***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.0E-53114274IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.9E-25114155IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.4E-23226273IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MNMLGLRDLV LIAQTPSSLH NQQNQPISSD HHPNLPLPSS SSSALSVGLG IFPLLTTTTP  60
PHHQDSNFWN LKMCQPQQVM IMNSTSKRVE EKEDEKIKNL MIEENSNGGD EFKVCLDCGN  120
RAKKDCSFKR CRTCCKGRGF DCSTHVKSTW VPASLRRDRK MVLAETGYSD GGGGGVSSGT  180
KRQRILVSSS HNAATSHSSS SIAATRSLSL DITSSCHQDA RFKQSLPRYV RAPAVFKCHR  240
VSAIGNGEDE LAYLATVNIS GHVFKGFLYD QGIDAKNETK PCVSELQLGS NGSGKSYREC  300
SSSAIEVPTS AYPASAC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA37240
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627845.11e-177protein LATERAL ROOT PRIMORDIUM 1 isoform X2
RefseqXP_024628230.11e-177protein LATERAL ROOT PRIMORDIUM 1 isoform X2
TrEMBLA0A2K3PM190.0A0A2K3PM19_TRIPR; Short internode related sequence
STRINGAET023211e-176(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-46Lateral root primordium (LRP) protein-related