PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37135
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 353aa    MW: 39739.6 Da    PI: 6.6773
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37135genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.42.9e-32922321128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr 76 
                                lp+G++F+P+d+e++ ++L++kv  +       ++++   ++ v +i+ ++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r
  Tp57577_TGAC_v2_mRNA37135  92 LPAGVKFDPNDQEIL-QHLEAKVLFDVtklhplIDEFIPtLEGVnGICCTHPEKLP-GVRKDGQVRHFFHRPSKAYTTGTRKRR 173
                                799***********9.99****988774554443332333677767**********.666777888****************** PP

                        NAM  77 atk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                +++      + +W++tgk+++v+  +g  +g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Tp57577_TGAC_v2_mRNA37135 174 KVDtdkdgsETRWHKTGKTRPVFI-GGVMKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 232
                                743345454778************.9*************6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-3788251IPR003441NAC domain
PROSITE profilePS5100532.5692251IPR003441NAC domain
PfamPF023654.0E-1493232IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MHFNHTQQVL ASTRAREGVK EEIMTWRNDS NEQDRGIEVI TSPIIPRTSN ETTIVTHDET  60
KQPQQVQTIT CPSCGHNIEV QDQGGINELP GLPAGVKFDP NDQEILQHLE AKVLFDVTKL  120
HPLIDEFIPT LEGVNGICCT HPEKLPGVRK DGQVRHFFHR PSKAYTTGTR KRRKVDTDKD  180
GSETRWHKTG KTRPVFIGGV MKGFKKILVL YTNYGRQKKP EKTNWVMHQY HLGTNEEEKD  240
GELVVSKVFF QTQPRQCGGG NNNSIIINET YDENGLMSNQ GNVQDDNEVP PPPPPMDYYN  300
ASHFINYEHV VGHNLEGSSV SQFIPNMVMQ GADNSSFIGL AMDANKARLE RN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA37135
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456941.10.0NAC domain-containing protein 10
SwissprotO494591e-113NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2Z6NLG90.0A0A2Z6NLG9_TRISU; Uncharacterized protein
STRINGXP_004505101.11e-179(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-114NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]