PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37080
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family BES1
Protein Properties Length: 331aa    MW: 35905.1 Da    PI: 9.9738
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37080genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822206.38.4e-6451581147
                     DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaags 84 
                                g+sgr ptwkErEnnkrRERrRRaiaakiy+GLR+qGn+klpk++DnneVlkALc eAGw+ve+DGttyrkgsk++  +e++g+
  Tp57577_TGAC_v2_mRNA37080   5 GSSGRLPTWKERENNKRRERRRRAIAAKIYSGLRSQGNFKLPKHCDNNEVLKALCSEAGWIVEEDGTTYRKGSKRPLLNEMGGT 88 
                                689***********************************************************************9955555555 PP

                     DUF822  85 sas........aspesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvs 147
                                  +         sp+ss+  s++ss+++sp++sy+asp+sssfpsps++d is+ s + llp++++ ++++
  Tp57577_TGAC_v2_mRNA37080  89 PPNmsacsslqPSPQSSSFPSPQSSSFPSPIPSYHASPTSSSFPSPSRMDGISNPS-SFLLPFIRNITSIP 158
                                55500001111555555556778889999***********************8874.77888888776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.9E-586144IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MTGGGSSGRL PTWKERENNK RRERRRRAIA AKIYSGLRSQ GNFKLPKHCD NNEVLKALCS  60
EAGWIVEEDG TTYRKGSKRP LLNEMGGTPP NMSACSSLQP SPQSSSFPSP QSSSFPSPIP  120
SYHASPTSSS FPSPSRMDGI SNPSSFLLPF IRNITSIPTN LPPLRISNSA PVTPPLSSPR  180
SSKRKADFES LSNGSFNSSF RHPLFATSAP SSPTRRNHLP PSTIPECDES DASTVDSGRW  240
VSFQTTAVHG AAPPSPTFNL MKPVMQKITP QSSMDMIHEA MQWSSGSAAE RGRGSDFDFE  300
NGRVVKPWEG ERIHEVGVDE LELTLGFGKA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-25988372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-25988372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-25988372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-25988372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA37080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1437940.0BT143794.1 Medicago truncatula clone JCVI-FLMt-9I5 unknown mRNA.
GenBankCR9621210.0CR962121.2 Medicago truncatula chromosome 5 clone mte1-77f5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611934.11e-179BES1/BZR1 homolog protein 2
SwissprotQ94A431e-103BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLA0A2K3PAM20.0A0A2K3PAM2_TRIPR; Bes1/bzr1 protein 2-like
STRINGAES948921e-178(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127534105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75080.27e-70BES1 family protein