PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36996
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 345aa    MW: 37968.7 Da    PI: 5.618
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36996genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.3e-31153211259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp+++++tY++eHnh+
  Tp57577_TGAC_v2_mRNA36996 153 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPTMFIVTYTSEHNHP 211
                                79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-31145213IPR003657WRKY domain
PROSITE profilePS5081134.486147213IPR003657WRKY domain
SuperFamilySSF1182903.4E-26150213IPR003657WRKY domain
SMARTSM007744.0E-37152212IPR003657WRKY domain
PfamPF031068.2E-26154211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEDWDLHAVV RGCSTVTSTT STTTATSSVF PLHHDPSCGF SSMFGGEQKP QILSLSTHPF  60
EAKSSSIEEL HELCKPFFSR SQPISLQTSP MFSSFSYSSA SPKLAQTQDR QQQQQHRSKQ  120
PHQGGSSVTN QRSKRRKNQL KKVCQVPVEN LSSDIWAWRK YGQKPIKGSP YPRGYYRCSS  180
SKGCLARKQV ERNRSDPTMF IVTYTSEHNH PAPTHKNSLA GSTRQKPLTP PQAETNKEDQ  240
SEKEDLTKPS SPATSGGEEE VQIQGEKSES REEKEDCFME EDEEGDEFGS LDDVVLTDDF  300
FENLDELNQL AGGSGDCFLD PFSSAIAIPN WVANSAAATA AGGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-22138214380Disease resistance protein RRS1
5w3x_D1e-22138214380Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36996
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624081.11e-162WRKY transcription factor 22
TrEMBLA0A2K3NED60.0A0A2K3NED6_TRIPR; WRKY transcription factor 22-like protein
STRINGAES802991e-161(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-60WRKY family protein