PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36941
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 360aa    MW: 40487.7 Da    PI: 10.3081
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36941genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.4e-31293351360
                                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                                D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYeg+Hnh+k
  Tp57577_TGAC_v2_mRNA36941 293 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGDHNHPK 351
                                99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.5E-17244289IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-33279351IPR003657WRKY domain
PROSITE profilePS5081129.746286352IPR003657WRKY domain
SuperFamilySSF1182901.12E-26289351IPR003657WRKY domain
SMARTSM007743.0E-37291351IPR003657WRKY domain
PfamPF031061.3E-26293350IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEEVEQANKT AVESCHRVLS MLCQPRDQVH HRNLMVETGE AVNRFKKVVS LLHKSLGHAR  60
VRKSKTHQQV PFPQNVFLDN PNCQKTINHQ TKNLHFTQTS HPENSVQELG LTIRNPLSLG  120
NPSLELSSNG KSPLHLAQPA AASSHYHFIQ QQQQQQQQRF LLQQHQQQQQ QQQMKHQAEM  180
MFRRNTSGIN LNFDNTTSGT PTMSSTRSFI SSLSIDGSVA NMDGSSFHLI GAPISSDQNS  240
QQHKRKCSAR GDEGSLKCGS SSKCHCSKKR KHRVKRSIKV PAISNKLADI PPDDYSWRKY  300
GQKPIKGSPH PRGYYKCSSM RGCPARKHVE RCLEEPTMLI VTYEGDHNHP KVPTQSANA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-202873531075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36941
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1471250.0BT147125.1 Medicago truncatula clone JCVI-FLMt-9C16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237604.20.0WRKY transcription factor 22
RefseqXP_028205918.10.0probable WRKY transcription factor 21
SwissprotO043361e-119WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A2K3MN430.0A0A2K3MN43_TRIPR; WRKY transcription factor
STRINGXP_004495133.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-91WRKY DNA-binding protein 21