PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA36912 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | AP2 | ||||||||
Protein Properties | Length: 377aa MW: 42552.5 Da PI: 9.6267 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.6e-16 | 126 | 174 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 s+++GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ ++ Tp57577_TGAC_v2_mRNA36912 126 SQFRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVMFR 174 789******************......55*********************97766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-15 | 126 | 183 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 16.687 | 127 | 183 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-16 | 127 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-8 | 127 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-30 | 127 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MSMLDLNVDI IHVDDYSTNV QKGLQLQTFP HEISDSRTSN SSVSNPTDEY SSNNSFPFNF 60 DLLKKENDVS ETITRTLFPV SADGGGRLCD SNSINQRLNF DDQNGHRTLQ QKQPRKSRRG 120 PRSRSSQFRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA VMFRGVDADI 180 NFILSDYEED LKQMRGLSKE EFIQRLRRQT NGNSRRSSTY RSILPLHKYG QEDPPYVAKT 240 FCHKSHMKET SFKASTTYKG EIIANSNKLH HLDLSLRISP SSKQLDNNNS GVGFSSACTT 300 YMIPQERGTM QEMALLNIKK EVPLQQVLAW QFCSNGRRIA LGSLQSNAAA SSGFVSTLSP 360 INSHTISSLS QPQYYR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA36912 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013467316.2 | 1e-166 | ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
TrEMBL | A0A072VTF3 | 1e-162 | A0A072VTF3_MEDTR; AP2 domain transcription factor | ||||
STRING | XP_007145449.1 | 1e-129 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15652 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.2 | 2e-42 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA36912 |