PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3688
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 258aa    MW: 28997.7 Da    PI: 9.8258
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3688genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.67.9e-1587132247
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               ++WT+eE+  ++++ ++lG+g+W+ I+r + ++Rt+ q+ s+ qk+
  Tp57577_TGAC_v2_mRNA3688  87 MPWTEEEHHMFLRGLEKLGKGNWRGISRDFVTTRTPTQVASHAQKH 132
                               69******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.38481137IPR017930Myb domain
SuperFamilySSF466894.79E-1782137IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-1784136IPR006447Myb domain, plants
SMARTSM007179.4E-1085135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-1286132IPR009057Homeodomain-like
PfamPF002492.2E-1287132IPR001005SANT/Myb domain
CDDcd001673.79E-988133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MRIARKCSYC GNLGHNSRTC NNSLSQDQFH LYSTSPSYFA TKWSFRKNYL LSSQPYSLPT  60
LFGTNENSDS YLGSGHMSTI GSSKKGMPWT EEEHHMFLRG LEKLGKGNWR GISRDFVTTR  120
TPTQVASHAQ KHFLRQSQNS FINKRKHLSL LKVSKLKYLS RFEAFSEQSE AIVTLSGITN  180
LTENDISYIS QLSGSRNFLS QWLSHPQYSV LKLPTSSTST NCTSRSVAPD LELKLATPMP  240
LEVTEACSVG PLSYNHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3688
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1335723e-70AC133572.35 Medicago truncatula clone mth2-10o11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603145.11e-112transcription factor MYBS3 isoform X1
TrEMBLG7J7M51e-111G7J7M5_MEDTR; MYB-like transcription factor family protein
STRINGAES733961e-112(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151421013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.16e-34MYB_related family protein