PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 101aa    MW: 10757 Da    PI: 10.2978
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36840genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26061.32.6e-193886148
                     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllka 48
                               +C aCk+lrrkC+ +C++apyf  +q +++f +vhk+FGasnv+kll+ 
  Tp57577_TGAC_v2_mRNA36840 38 PCGACKFLRRKCSGGCIFAPYFGRDQgAARFVAVHKVFGASNVSKLLSX 86
                               7***********************9989******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.91637100IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-183886IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MAESQRGDGS SRNTCNKDTN AAKRAMTGAT RDESVVPPCG ACKFLRRKCS GGCIFAPYFG  60
RDQGAARFVA VHKVFGASNV SKLLSXXXXX XXXXXXXXPP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-1638851157LOB family transfactor Ramosa2.1
5ly0_B6e-1638851157LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36840
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568165.19e-37LOB domain-containing protein 20
SwissprotQ9SRV33e-24LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2K3NLU42e-55A0A2K3NLU4_TRIPR; LOB domain-containing protein 20-like
STRINGXP_004489657.14e-36(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-26LOB domain-containing protein 20