PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36836
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 195aa    MW: 21596 Da    PI: 6.3842
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36836genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.13e-38111111100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                +C aCk++++kC+++C++apyf  eq +++fa+vhk+FGasnv+kll+++++++r++a++++ yeA+ar++dPvyG+v++il+l
  Tp57577_TGAC_v2_mRNA36836  11 PCGACKYMKKKCPSECIFAPYFGREQgTASFAAVHKVFGASNVSKLLSNVSTNRRHEAAATISYEAQARLSDPVYGCVSTILAL 94 
                                7**********************99989******************************************************** PP

                     DUF260  84 qqqleqlkaelallkee 100
                                qqq+++++ae++ +++e
  Tp57577_TGAC_v2_mRNA36836  95 QQQVAEMQAEVSIMQTE 111
                                ***********999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.99910112IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3711109IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAESQRDVTV PCGACKYMKK KCPSECIFAP YFGREQGTAS FAAVHKVFGA SNVSKLLSNV  60
STNRRHEAAA TISYEAQARL SDPVYGCVST ILALQQQVAE MQAEVSIMQT ELINRRFAGA  120
NALQTTHQEQ HQTLQQPNFN VQPAYSNNSY AATNNFMNMN NFNPGFDLTM ETAPSSHGLE  180
PFQNSWFSHF EEDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-331111411113LOB family transfactor Ramosa2.1
5ly0_B4e-331111411113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36836
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6922893e-88EF692289.1 Trifolium repens clone CloverSSR-64_G01_002_1 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451538.12e-96LOB domain-containing protein 20
SwissprotQ9SRV36e-58LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2K3NGI51e-143A0A2K3NGI5_TRIPR; LOB domain-containing protein 20-like
STRINGXP_004489657.11e-86(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-58LOB domain-containing protein 20