PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36834
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 225aa    MW: 24338 Da    PI: 8.4877
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36834genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-39381391101
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                +C aCk+lrrkC+++C++apyf  +q +++fa+vhk+FGasnv+kll+++++++r++a++++ yeA+ar++dPvyG+v++il+l
  Tp57577_TGAC_v2_mRNA36834  38 PCGACKFLRRKCSDGCIFAPYFGTDQgAARFAAVHKVFGASNVSKLLSSISTNHRHEAAATISYEAQARLSDPVYGCVSTILAL 121
                                7***********************9989******************************************************** PP

                     DUF260  84 qqqleqlkaelallkeel 101
                                qqq++ ++ae+++++++l
  Tp57577_TGAC_v2_mRNA36834 122 QQQVAAMQAEVSMMHSQL 139
                                ************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.08437139IPR004883Lateral organ boundaries, LOB
PfamPF031959.2E-3938136IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAESQSGAGS SGNKRSKGTN AGKRAMAGVT QDASTVPPCG ACKFLRRKCS DGCIFAPYFG  60
TDQGAARFAA VHKVFGASNV SKLLSSISTN HRHEAAATIS YEAQARLSDP VYGCVSTILA  120
LQQQVAAMQA EVSMMHSQLM NRRYAYASAH QTTHHHQQHQ ILQQPNFNVS VQPAYSNNSS  180
ASTNNFMNMN SFNPGFDLTM ETARSSQSLE PFQNSRMSHY EEDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-383814511115LOB family transfactor Ramosa2.1
5ly0_B8e-383814511115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36834
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568165.11e-114LOB domain-containing protein 20
SwissprotQ9SRV32e-63LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2K3N5851e-165A0A2K3N585_TRIPR; LOB domain-containing protein 20-like
STRINGXP_004489657.11e-114(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-53LOB domain-containing protein 20