PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36809
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 364aa    MW: 42641.8 Da    PI: 8.6404
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36809genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.47.8e-2134121189
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                                +f+++Y+ ++GF+vr+++ +   ++g i ++++vCskeg r+++k++ + ++++r +trtgC  k+ +k  k  +k++++++  
  Tp57577_TGAC_v2_mRNA36809  34 EFWKDYGGKIGFNVRRQYFNPD-KHGMILSARYVCSKEGVRKPDKRD-RLTSNRRFQTRTGCPVKMGIKYLKdIAKYKIHDFFD 115
                                69***************98887.7777******************99.9999*****************99989********** PP

                       FAR1  84 eHnHel 89 
                                +HnHel
  Tp57577_TGAC_v2_mRNA36809 116 KHNHEL 121
                                *****9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1534121IPR004330FAR1 DNA binding domain
PfamPF105514.2E-29244338IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDSVVPQETM SMDNELEWQP QLGKLFNTWE EAWEFWKDYG GKIGFNVRRQ YFNPDKHGMI  60
LSARYVCSKE GVRKPDKRDR LTSNRRFQTR TGCPVKMGIK YLKDIAKYKI HDFFDKHNHE  120
LHLPETTHML ASQRNLSKIQ AHEIDLADDA GIKQRALFEL MSRQVGGREN LGYTRVDQKN  180
YLRIKRLKNM AYGEVGSLLQ HFQQKCIENP SFYHGIQLDI DEQITNIFWA DARMIMDYEY  240
FGDVVTLDTT YSTNNAYRPL AIFAGFNHFR GVVIFGAALL YDETAESFEW LFREFLKAHK  300
SKKPQTVFTD QDHAMAKALR EVMPETYHGL CTWHLMQNVL KHLGHLMKNG SNLLRDIKFC  360
MFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36809
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642355.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3PRH20.0A0A2K3PRH2_TRIPR; Protein FAR1-related sequence 5-like
STRINGXP_004305434.11e-151(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-67FAR1-related sequence 5