PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36791
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 371aa    MW: 40672.4 Da    PI: 9.5283
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36791genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30160159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                               ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+a+d +++++tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA36791  1 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCADDLSILITTYEGTHNHP 60
                               58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182906.67E-26161IPR003657WRKY domain
SMARTSM007743.5E-36161IPR003657WRKY domain
PROSITE profilePS5081127.439162IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-29260IPR003657WRKY domain
PfamPF031064.2E-27260IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA PACPVRKQVQ RCADDLSILI TTYEGTHNHP  60
LQVTASAMAY TTSAAASMML SGSSTSSSSS HQNIQHQNIH HQNSTSFGNS PTLLNGLNFN  120
NNYFEQSRTP KQQFFIPQNH NNLFPTITLD LTSPSSISSS SSNIASIPRF PPNNLNFCST  180
QPPNFTPTST IWNNNKLGLG FINNNTLPIE KPQIRPFNHF QENFYQNQNC VTNYQTPSRQ  240
ALAETISKAI STDPSLHSVI AAAVTSIVGQ GSNNGGNQEE LRDNGLGSGL NLKLGEYPQM  300
VSNNLLNQNG KGCLKGSYFK RLSPTTSSQA KNFMLLQPSL PNSLSKSNTT RPPSIVNHIN  360
HCDPKMNTHH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-191611776Probable WRKY transcription factor 4
2lex_A1e-191611776Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36791
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1393550.0AC139355.8 Medicago truncatula clone mth2-36o3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003621143.20.0probable WRKY transcription factor 72
SwissprotQ9LXG83e-52WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLG7KZU90.0G7KZU9_MEDTR; Putative transcription factor WRKY family
STRINGAES773610.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-38WRKY DNA-binding protein 9