PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA3668

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

HSF

Protein Properties

Length: 382aa MW: 42900 Da PI: 4.5325

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA3668	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.1	7.7e-35	48	139	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 Fl+k+++++ed+++++++sws nsfvv+d ++f++++Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F Tp57577_TGAC_v2_mRNA3668 48 FLTKTFDVVEDPSTDSIVSWSGARNSFVVWDLHKFSTTILPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGF 123 9******************999*************************************999.........**** PP XXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkks 102 +g+++ll++ikr+++ Tp57577_TGAC_v2_mRNA3668 124 LAGQRNLLKTIKRRRN 139 ***********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	22	No hit	No description
Gene3D	G3DSA:1.10.10.10	1.3E-36	44	137	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	3.4E-33	44	137	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.7E-58	44	137	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.8E-30	48	137	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	48	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	86	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	87	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.2E-18	99	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009644	Biological Process	response to high light intensity
GO:0010200	Biological Process	response to chitin
GO:0010286	Biological Process	heat acclimation
GO:0034605	Biological Process	cellular response to heat
GO:0034620	Biological Process	cellular response to unfolded protein
GO:0042542	Biological Process	response to hydrogen peroxide
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071456	Biological Process	cellular response to hypoxia
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MNGIQVKEEE ILAYASVGST SCSPSSSSGS NLTPKPMEGL HEIGPPPFLT KTFDVVEDPS 60 TDSIVSWSGA RNSFVVWDLH KFSTTILPRY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN 120 EGFLAGQRNL LKTIKRRRNV TQSQAMQQET GGGACIELGE YGLEGEIERL RRDRAVLMAE 180 IVKLRQQQHN SRDQLSAMEA RLLITEKKHQ QMMTFLAKAL SNQSFIQQLA NNRELKGVEM 240 KRKRRLTASS SLENLQNDSA TMMTVPIESV VDYSSQEQQE GLTTIESEME TLLNAYDNES 300 SSEIKDYSTL TSVPSAKNES NLGDTVWEDL LNQELVGGNP EDEVVIGELS RIDVPVEDLV 360 EKNDDWTVDL QNLVDQMGFE P*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MNGIQVKEEE ILAYASVGST SCSPSSSSGS NLTPKPMEGL HEIGPPPFLT KTFDVVEDPS  60
TDSIVSWSGA RNSFVVWDLH KFSTTILPRY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN  120
EGFLAGQRNL LKTIKRRRNV TQSQAMQQET GGGACIELGE YGLEGEIERL RRDRAVLMAE  180
IVKLRQQQHN SRDQLSAMEA RLLITEKKHQ QMMTFLAKAL SNQSFIQQLA NNRELKGVEM  240
KRKRRLTASS SLENLQNDSA TMMTVPIESV VDYSSQEQQE GLTTIESEME TLLNAYDNES  300
SSEIKDYSTL TSVPSAKNES NLGDTVWEDL LNQELVGGNP EDEVVIGELS RIDVPVEDLV  360
EKNDDWTVDL QNLVDQMGFE P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	4e-25	46	137	18	120	Heat shock factor protein 1
5d5u_B	5e-25	46	137	27	129	Heat shock factor protein 1
5d5v_B	5e-25	46	137	27	129	Heat shock factor protein 1
5d5v_D	5e-25	46	137	27	129	Heat shock factor protein 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	136	LKTIKRR
2	168	173	RLRRDR

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress responses. Seems to be involved in other environmental stress responses. Activates ascorbate peroxidase 2 (APX2) in addition to several heat shock protein (HSPs). {ECO:0000269\|PubMed:16649111, ECO:0000269\|PubMed:17059409, ECO:0000269\|PubMed:17085506}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA3668

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress, high light and hydrogen peroxide (H(2)O(2)). {ECO:0000269\|PubMed:16649111, ECO:0000269\|PubMed:17059409, ECO:0000269\|PubMed:17085506}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR956434	0.0	CR956434.13 M.truncatula DNA sequence from clone MTH2-35N9 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003603161.1	0.0	heat stress transcription factor A-2
Swissprot	O80982	1e-119	HSFA2_ARATH; Heat stress transcription factor A-2
Swissprot	P41152	1e-119	HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBL	A0A2K3MNV6	0.0	A0A2K3MNV6_TRIPR; Heat shock factor protein hsf30-like
STRING	AES73412	0.0	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-107	heat shock transcription factor A2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA3668

Publications ? help Back to Top
Liu HC,Charng YY Common and distinct functions of Arabidopsis class A1 and A2 heat shock factors in diverse abiotic stress responses and development. Plant Physiol., 2013. 163(1): p. 276-90 [PMID:23832625] Jung HS, et al. Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9 [PMID:23918368] Chauhan H,Khurana N,Agarwal P,Khurana JP,Khurana P A seed preferential heat shock transcription factor from wheat provides abiotic stress tolerance and yield enhancement in transgenic Arabidopsis under heat stress environment. PLoS ONE, 2013. 8(11): p. e79577 [PMID:24265778] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Weng M, et al. Histone chaperone ASF1 is involved in gene transcription activation in response to heat stress in Arabidopsis thaliana. Plant Cell Environ., 2014. 37(9): p. 2128-38 [PMID:24548003] Jang YH, et al. A homolog of splicing factor SF1 is essential for development and is involved in the alternative splicing of pre-mRNA in Arabidopsis thaliana. Plant J., 2014. 78(4): p. 591-603 [PMID:24580679] Stief A, et al. Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors. Plant Cell, 2014. 26(4): p. 1792-1807 [PMID:24769482] Dobrá J, et al. The impact of heat stress targeting on the hormonal and transcriptomic response in Arabidopsis. Plant Sci., 2015. 231: p. 52-61 [PMID:25575991] Yamauchi Y,Kunishima M,Mizutani M,Sugimoto Y Reactive short-chain leaf volatiles act as powerful inducers of abiotic stress-related gene expression. Sci Rep, 2015. 5: p. 8030 [PMID:25619826] Shi H, et al. Melatonin induces class A1 heat-shock factors (HSFA1s) and their possible involvement of thermotolerance in Arabidopsis. J. Pineal Res., 2015. 58(3): p. 335-42 [PMID:25711624] Mueller SP,Krause DM,Mueller MJ,Fekete A Accumulation of extra-chloroplastic triacylglycerols in Arabidopsis seedlings during heat acclimation. J. Exp. Bot., 2015. 66(15): p. 4517-26 [PMID:25977236] Nie S,Yue H,Xing D A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance. Plant Physiol., 2016. [PMID:26099269] Nguyen AH, et al. Loss of Arabidopsis 5'-3' Exoribonuclease AtXRN4 Function Enhances Heat Stress Tolerance of Plants Subjected to Severe Heat Stress. Plant Cell Physiol., 2015. 56(9): p. 1762-72 [PMID:26136597] Hu Z, et al. Histone acetyltransferase GCN5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis. Plant J., 2015. 84(6): p. 1178-91 [PMID:26576681] Lämke J,Brzezinka K,Bäurle I HSFA2 orchestrates transcriptional dynamics after heat stress in Arabidopsis thaliana. Transcription, 2016. 7(4): p. 111-4 [PMID:27383578] Wang X,Huang W,Liu J,Yang Z,Huang B Molecular regulation and physiological functions of a novel FaHsfA2c cloned from tall fescue conferring plant tolerance to heat stress. Plant Biotechnol. J., 2017. 15(2): p. 237-248 [PMID:27500592] Chen ST,He NY,Chen JH,Guo FQ Identification of core subunits of photosystem II as action sites of HSP21, which is activated by the GUN5-mediated retrograde pathway in Arabidopsis. Plant J., 2017. 89(6): p. 1106-1118 [PMID:27943531] Kataoka R,Takahashi M,Suzuki N Coordination between bZIP28 and HSFA2 in the regulation of heat response signals in Arabidopsis. Plant Signal Behav, 2017. 12(11): p. e1376159 [PMID:28873003] Wang X,Zhuang L,Shi Y,Huang B Up-Regulation of HSFA2c and HSPs by ABA Contributing to Improved Heat Tolerance in Tall Fescue and Arabidopsis. Int J Mol Sci, 2018. [PMID:28914758] Llamas E,Pulido P,Rodriguez-Concepcion M Interference with plastome gene expression and Clp protease activity in Arabidopsis triggers a chloroplast unfolded protein response to restore protein homeostasis. PLoS Genet., 2017. 13(9): p. e1007022 [PMID:28937985] Li X, et al. Plastid Translation Elongation Factor Tu Is Prone to Heat-Induced Aggregation Despite Its Critical Role in Plant Heat Tolerance. Plant Physiol., 2018. 176(4): p. 3027-3045 [PMID:29444814] Scharf KD,Rose S,Thierfelder J,Nover L Two cDNAs for tomato heat stress transcription factors. Plant Physiol., 1993. 102(4): p. 1355-6 [PMID:8278556]