PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA36577

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

G2-like

Protein Properties

Length: 418aa MW: 47756.8 Da PI: 8.0253

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA36577	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	45.8	1.3e-14	99	129	25	55
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +A Pkt+++lm+++gLtl+h+kSHLQk+Rl Tp57577_TGAC_v2_mRNA36577 99 TEASPKTVMKLMGIPGLTLYHLKSHLQKFRL 129 689***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.17E-5	99	130	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-7	99	130	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	9.8E-14	101	130	IPR009057	Homeodomain-like
Pfam	PF14379	1.2E-24	207	254	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MYHHHQHQGK NIHSSSRMSI PSERHMFLQT GNGSSDSRLV LXXXXXXXXX XXXXXXXXXX 60 NQLGGADSKY TYDIHISFVV NHQILSNIEI YFTNLNLITE ASPKTVMKLM GIPGLTLYHL 120 KSHLQKFRLS KNLHGQSNNN VKHKLTTHSA SVTDERLXXX XXXXXXXXXX XXXXXFLDYT 180 LHVIFFGMNI LSLRFYANFH VPFGRDIHIS EALQMQIEVQ RRLNEQLEVQ RHLQLRIEAQ 240 GKYLQSVLEK AQETLGRQNL GIVGLEAAKV QLSELVSKVS SQCLNSTFSE MKELQGFCPQ 300 PNDGSMDSSC LTSCDRSQKE QEIIQNGGFG LRHFNNNNHE LAGSVQNLRN NEVLNWCVDE 360 VKKNSTNFLT PLGKNNDLER NHGNLSMNIG VETRTETMKS VEDNNKMQQS SNYFYLI*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MYHHHQHQGK NIHSSSRMSI PSERHMFLQT GNGSSDSRLV LXXXXXXXXX XXXXXXXXXX  60
NQLGGADSKY TYDIHISFVV NHQILSNIEI YFTNLNLITE ASPKTVMKLM GIPGLTLYHL  120
KSHLQKFRLS KNLHGQSNNN VKHKLTTHSA SVTDERLXXX XXXXXXXXXX XXXXXFLDYT  180
LHVIFFGMNI LSLRFYANFH VPFGRDIHIS EALQMQIEVQ RRLNEQLEVQ RHLQLRIEAQ  240
GKYLQSVLEK AQETLGRQNL GIVGLEAAKV QLSELVSKVS SQCLNSTFSE MKELQGFCPQ  300
PNDGSMDSSC LTSCDRSQKE QEIIQNGGFG LRHFNNNNHE LAGSVQNLRN NEVLNWCVDE  360
VKKNSTNFLT PLGKNNDLER NHGNLSMNIG VETRTETMKS VEDNNKMQQS SNYFYLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA36577

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT146949	1e-171	BT146949.1 Medicago truncatula clone JCVI-FLMt-19I1 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003596817.1	1e-173	myb-related protein 2 isoform X2
TrEMBL	A0A2Z6N8G6	1e-178	A0A2Z6N8G6_TRISU; Uncharacterized protein
STRING	AES67068	1e-172	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	3e-83	G2-like family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA36577