PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA3646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | B3 | ||||||||
Protein Properties | Length: 467aa MW: 53909.7 Da PI: 6.094 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.3 | 1.3e-13 | 233 | 317 | 13 | 97 |
TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + rl++p f +e++ ++ ++ ++++ + W v l + + + +++++GWk+F ++++L++gD++ F+ ++r+ ++++++ Tp57577_TGAC_v2_mRNA3646 233 TLRLRIPTWFSKEYM-NELLQRNAMIRSvDEEMAWGVSLYLDESNRNFTMGAGWKSFSREHNLQVGDVCKFETTQREPLSFTITI 316 4589**********5.44666788889945559******77999999*************************8888888777777 PP E CS B3 97 f 97 + Tp57577_TGAC_v2_mRNA3646 317 V 317 5 PP | |||||||
2 | B3 | 40.7 | 4.2e-13 | 379 | 456 | 10 | 90 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 v++++ lv+p + +++h++++ +s++l++ +W v+++y+++ + ++t+GWkeFv++ ++k gD+++F++++ ++ Tp57577_TGAC_v2_mRNA3646 379 VTSLDKLVIPSELLKRHNISNGNSVELKV---GEGTWFVEVSYNQYLDYGWFTEGWKEFVRECKVKIGDTCLFEMIDVQNH 456 678899***********999777766664...4589**************************************8865444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-11 | 13 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-12 | 15 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.034 | 17 | 106 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.11E-8 | 31 | 104 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-13 | 214 | 315 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-15 | 215 | 315 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.77E-12 | 218 | 316 | No hit | No description |
PROSITE profile | PS50863 | 12.478 | 221 | 320 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-6 | 224 | 320 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.6E-11 | 231 | 317 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.939 | 370 | 466 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.5E-6 | 375 | 466 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-15 | 377 | 462 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-13 | 377 | 457 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-10 | 379 | 459 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.17E-14 | 379 | 463 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MMSIHHGRGS DAKGIHFYQT IQLRELQDQE LLIPRNFVER YWKDVSNPIS LRLPNDSVCK 60 MFWVRWGDEI WLQDWKRFAR SLRCGDLLVF QYKGGSDFNV TIFDDSKLEI DYSNMICIDE 120 QEAKESDEDG YVKITNEGDN TKQPLKKKKI NSNDSATTAA TPQVTNIDKR KINMKATQQK 180 LPEANRNRKG NGKKAKKCSK IVDANKRSCT DSHPDENPNF TLKLSRFSVE GDTLRLRIPT 240 WFSKEYMNEL LQRNAMIRSV DEEMAWGVSL YLDESNRNFT MGAGWKSFSR EHNLQVGDVC 300 KFETTQREPL SFTITIVPAT KEPCPEQFQE NQRVQENSET SPVEDMGYVG NNYGEGISRS 360 CPNHDSESPN LHNKFEVFVT SLDKLVIPSE LLKRHNISNG NSVELKVGEG TWFVEVSYNQ 420 YLDYGWFTEG WKEFVRECKV KIGDTCLFEM IDVQNHVFKF SIILDV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA3646 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024630376.1 | 1e-114 | B3 domain-containing protein REM16 | ||||
TrEMBL | A0A2K3P3M1 | 0.0 | A0A2K3P3M1_TRIPR; B3 domain-containing transcription factor vrn1-like protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-19 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA3646 |