PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36414
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 473aa    MW: 53885.7 Da    PI: 5.6428
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36414genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-08353400448
                                S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                WTt E  +l d++ ++G g+W+ I r +      Rt+ +++++w+++l
  Tp57577_TGAC_v2_mRNA36414 353 WTTSEVTKLMDGISEYGVGRWTDIQRFLFsaaGYRTPTDIRDKWRNLL 400
                                ****************************999999************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-12344401IPR009057Homeodomain-like
PROSITE profilePS5129413.17345404IPR017930Myb domain
SuperFamilySSF466896.8E-15347407IPR009057Homeodomain-like
SMARTSM007179.7E-9349402IPR001005SANT/Myb domain
CDDcd116602.76E-16351401No hitNo description
PfamPF139211.9E-8353413No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDRDEYLRKC SNMKCQRVQV EGSYVPSLQD DEMEVEHLFE EPRNDYVSLD GSLASYTALN  60
DKDDLQLEVL DDFLDDGFLD DVEIDNFEGT DGFSDARGGY FLDFDFAKVE LLGSGANEDS  120
PVENSNSESQ SPGVSGSSTV GGISESTKVL PNSTQSKCKI ESLDETGPHD TNGIIRNNPS  180
QPSNVDCMYN ISLDIQHLHE LNNGYPLAGG ILSCKKENVT VENCQSAPPR EKRFRKPTQR  240
YIEESSTLKS KEKVRTTGAK KKRRSVSCSE LHTRTKRLEN IPIEKFSDNI PIEKFSDSDS  300
DVTLSELQHC MKYPKKEKLD YDYESFSSEE SSDEELTPKR CRTKDRRKNQ RMWTTSEVTK  360
LMDGISEYGV GRWTDIQRFL FSAAGYRTPT DIRDKWRNLL RACSSQRFNK KEEGEQDDEN  420
SPRTLPLSVA SRVLELSKIH PYPNRRNKKR SFPGIANQSN RSRRNVRRKK CT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259263KKKRR
2336340TPKRC
3444450RRNKKRS
4447469KKRSFPGIANQSNRSRRNVRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36414
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1537251e-169AC153725.3 Medicago truncatula clone mth2-78c5, complete sequence.
GenBankAC1833031e-169AC183303.12 Medicago truncatula clone mth2-159e4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590460.10.0uncharacterized protein LOC11420792 isoform X1
TrEMBLG7IA940.0G7IA94_MEDTR; Myb transcription factor
STRINGAES607110.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.17e-19TRF-like 6