PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA36413 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 473aa MW: 53885.7 Da PI: 5.6428 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1.1e-08 | 353 | 400 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WTt E +l d++ ++G g+W+ I r + Rt+ +++++w+++l Tp57577_TGAC_v2_mRNA36413 353 WTTSEVTKLMDGISEYGVGRWTDIQRFLFsaaGYRTPTDIRDKWRNLL 400 ****************************999999************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-12 | 344 | 401 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.17 | 345 | 404 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.8E-15 | 347 | 407 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-9 | 349 | 402 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.76E-16 | 351 | 401 | No hit | No description |
Pfam | PF13921 | 1.9E-8 | 353 | 413 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MDRDEYLRKC SNMKCQRVQV EGSYVPSLQD DEMEVEHLFE EPRNDYVSLD GSLASYTALN 60 DKDDLQLEVL DDFLDDGFLD DVEIDNFEGT DGFSDARGGY FLDFDFAKVE LLGSGANEDS 120 PVENSNSESQ SPGVSGSSTV GGISESTKVL PNSTQSKCKI ESLDETGPHD TNGIIRNNPS 180 QPSNVDCMYN ISLDIQHLHE LNNGYPLAGG ILSCKKENVT VENCQSAPPR EKRFRKPTQR 240 YIEESSTLKS KEKVRTTGAK KKRRSVSCSE LHTRTKRLEN IPIEKFSDNI PIEKFSDSDS 300 DVTLSELQHC MKYPKKEKLD YDYESFSSEE SSDEELTPKR CRTKDRRKNQ RMWTTSEVTK 360 LMDGISEYGV GRWTDIQRFL FSAAGYRTPT DIRDKWRNLL RACSSQRFNK KEEGEQDDEN 420 SPRTLPLSVA SRVLELSKIH PYPNRRNKKR SFPGIANQSN RSRRNVRRKK CT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 259 | 263 | KKKRR |
2 | 336 | 340 | TPKRC |
3 | 444 | 450 | RRNKKRS |
4 | 447 | 469 | KKRSFPGIANQSNRSRRNVRRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA36413 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC153725 | 1e-169 | AC153725.3 Medicago truncatula clone mth2-78c5, complete sequence. | |||
GenBank | AC183303 | 1e-169 | AC183303.12 Medicago truncatula clone mth2-159e4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003590460.1 | 0.0 | uncharacterized protein LOC11420792 isoform X1 | ||||
TrEMBL | G7IA94 | 0.0 | G7IA94_MEDTR; Myb transcription factor | ||||
STRING | AES60711 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4716 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 7e-19 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA36413 |