PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36328
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 545aa    MW: 61782 Da    PI: 4.9965
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36328genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.15.3e-1331705441374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l+e L++cA+a+s++d e +++l+++ls+++s +g+p+qRl ay++eAL ar+a+s+s +yk+l+++e ++ +s+e l+ ++++
  Tp57577_TGAC_v2_mRNA36328 170 LKEMLFTCAKAISENDIETTEWLMSELSKMVSVSGNPIQRLGAYMLEALVARIASSGSIIYKSLRCKEPKPATSKELLSHMHVL 253
                                5789******************************************************************************** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                +e++P+lkf+++ aN  I ea++ e++vHiiDf+i+qG+QW++L+qaLa +p+gpp++RiTg+++++s   +   l  +gerL+
  Tp57577_TGAC_v2_mRNA36328 254 YEICPYLKFGYMSANGVIAEALKDESEVHIIDFQINQGIQWISLIQALAGKPGGPPKIRITGFDDSTSAyaRGGGLDIVGERLS 337
                                *****************************************************************998899999********** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhn 249
                                k A++++v+fef++ +  + ++++le+L++++ Ea+aVn++++lh+++de+v+  + +rd++++lvk l Pkvv++veqe+++n
  Tp57577_TGAC_v2_mRNA36328 338 KHAQSCNVEFEFHA-IGANPTEVKLEDLKLRRSEAIAVNFAMMLHHVPDENVHGGQnHRDRLVRLVKCLCPKVVTLVEQESNTN 420
                                **************.6889999*****************************9877669************************** PP

                       GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                                + +Fl rf+e+++yy a+f+s++++lpre++eri+vE+++l+re+vn+vacegaer+erhe l+kW++ +++aGF+p+pls+++
  Tp57577_TGAC_v2_mRNA36328 421 ELPFLPRFVETMNYYLAVFESIDVSLPREHRERINVEQHCLAREVVNLVACEGAERVERHEVLKKWKSCFTMAGFTPYPLSSYI 504
                                ************************************************************************************ PP

                       GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                + ++k ll+ ++++ y++ee++g+l+lgW++++L++ SaWr
  Tp57577_TGAC_v2_mRNA36328 505 NFSIKNLLESYQGQ-YTLEEKDGALYLGWMNQALITSSAWR 544
                                ************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.778144525IPR005202Transcription factor GRAS
PfamPF035141.8E-130170544IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MQRSRNFSMQ TSFKHKMSYD SDMFNIESVQ NLDSYCFVQN ENLENYSSSD NSSHSNYPSF  60
QGLDQYSNFE SSNNSPVSKL QSNSYAFTSP NSLEIINDLL ENELCSTHTQ DDLWHKTREL  120
ENAMLGHDAA DILDIYNDMV MIPEESESDP LLLEAEKWKK MMEMISKGDL KEMLFTCAKA  180
ISENDIETTE WLMSELSKMV SVSGNPIQRL GAYMLEALVA RIASSGSIIY KSLRCKEPKP  240
ATSKELLSHM HVLYEICPYL KFGYMSANGV IAEALKDESE VHIIDFQINQ GIQWISLIQA  300
LAGKPGGPPK IRITGFDDST SAYARGGGLD IVGERLSKHA QSCNVEFEFH AIGANPTEVK  360
LEDLKLRRSE AIAVNFAMML HHVPDENVHG GQNHRDRLVR LVKCLCPKVV TLVEQESNTN  420
ELPFLPRFVE TMNYYLAVFE SIDVSLPREH RERINVEQHC LAREVVNLVA CEGAERVERH  480
EVLKKWKSCF TMAGFTPYPL SSYINFSIKN LLESYQGQYT LEEKDGALYL GWMNQALITS  540
SAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6017754326378Protein SCARECROW
5b3h_A2e-6017754325377Protein SCARECROW
5b3h_D2e-6017754325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36328
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370790.0AC137079.9 Medicago truncatula clone mth2-27d17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617697.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A2K3MNW40.0A0A2K3MNW4_TRIPR; SCARECROW-like protein 5-like
STRINGAET006560.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]