PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3630
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Nin-like
Protein Properties Length: 401aa    MW: 45310.1 Da    PI: 6.1299
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3630genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK70.22.8e-22291343252
                    RWP-RK   2 ekeisledlskyFslpikdAAk..eLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                               +++++l+dl+ yF+lpi++A+   ++++c+TvLK++CR+ G++RWPhRk+ksl
  Tp57577_TGAC_v2_mRNA3630 291 SASLTLSDLRDYFHLPIEEASDhpNVKLCPTVLKKTCRKAGLQRWPHRKVKSL 343
                               5789*****************8335779***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.677276363IPR003035RWP-RK domain
PfamPF020422.4E-18293343IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSQQNQHGIF HNTNSDTFNS NSNAMLSQQN HHQQGQGGNN DPFHYNLISP EDHHQQVQGD  60
NNNNDSMFIT NEMSQQNHHG GNNQSFSDPM VQEQYAQNSN NNSNNFSFGG NNFEVGGTSQ  120
MHEDQQLIQP SIQTPDLPNQ NEVLAIDQWP PTQVPFFCTC CQVLREIIHA NGFQFEKLEI  180
HGRIGLITHA IHHKLPTNGN TPNYQMIDFC KSSLDEIKKY LAKYCVDRNT SGYFILQDPM  240
SAFYETLCTG LDWIDDINME GPMDNNQNNS DDMGENATSD KKDLSAQRKK SASLTLSDLR  300
DYFHLPIEEA SDHPNVKLCP TVLKKTCRKA GLQRWPHRKV KSLLKQIAIM GAQLDGQDSA  360
TRARTEHEIN RLKQEMIAHC GGYIPTAMHN IAAFLPQQQQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3630
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501440.11e-151hybrid signal transduction histidine kinase A
TrEMBLA0A2K3LNQ70.0A0A2K3LNQ7_TRIPR; Uncharacterized protein (Fragment)
STRINGAES734391e-161(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74782846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.15e-12RWP-RK domain-containing protein