PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA36170

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 228aa MW: 26283.6 Da PI: 4.9222

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA36170	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.9	1.2e-16	148	217	2	73
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 fY++YA++ GF +rk + k+ ng i +r+f C +eg+ + + + +ke+r+r+++r++Cka+l+++ +k+ Tp57577_TGAC_v2_mRNA36170 148 FYKRYAYQHGFAIRKGRFVKQ--NGIISRRDFFCHREGSVSLKIIDPSKEQRKRESSRCECKAHLRISSQKS 217 9*************98877..******************99******************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-13	148	217	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MNSSPRSTFT VSSLEVPCDL SSIDTSVETM KRMLICLQDS RLVNQMINSI MDSVNVIDMN 60 FDLNECPIED ISHENGNSTI IVEHFDHAIV ANDVLEVDDI ESFEKENLAP YRENIQVNQF 120 FEEVDKDGQN IIPFVGQIFL TEEEAFAFYK RYAYQHGFAI RKGRFVKQNG IISRRDFFCH 180 REGSVSLKII DPSKEQRKRE SSRCECKAHL RISSQKSHDI FPSEWRC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA36170

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014619403.1	1e-83	protein FAR1-RELATED SEQUENCE 11-like isoform X2
Refseq	XP_014622071.1	1e-83	protein FAR1-RELATED SEQUENCE 11-like isoform X4
Refseq	XP_014634608.1	1e-83	protein FAR1-RELATED SEQUENCE 11-like isoform X3
TrEMBL	A0A445H0B1	4e-82	A0A445H0B1_GLYSO; Protein FAR1-RELATED SEQUENCE 11 (Fragment)
TrEMBL	A0A445JH67	6e-82	A0A445JH67_GLYSO; Protein FAR1-RELATED SEQUENCE 11 (Fragment)
STRING	AES62383	4e-63	(Medicago truncatula)
STRING	AES74601	7e-64	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15165	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-23	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA36170