PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA36094
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 681aa    MW: 73346.1 Da    PI: 6.6564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA36094genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83e-16472518455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Tp57577_TGAC_v2_mRNA36094 472 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 518
                                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.26E-17464522No hitNo description
Gene3DG3DSA:4.10.280.106.2E-21465526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-21465531IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-13472518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18474523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MPLYELYRLA RENLGNETNS TSVADQPSSP ENDFFELVWE SGQISSQGQS SRGTRKSPSC  60
RSLPSHCLPS HSPRGRDKDV GGGYGTNNNP KTGKFCDLDS GLNEIPMSVP SREVDEMMPW  120
LDYTMDGSFQ TEYGSDFLHE LTENDDLPSS NNFTLLEKRS NGNQMFRDSH KNSAEQMNVS  180
KDSSAEQVET ARHKGSTSQL YPPSSNQCQT SFVTVRSGAS DITENNNANN GNQGVPYGDI  240
NRIPSSSSDF SSLKVQKQDP ILPGNVSNVM NFSHFARPAA IVRANLQNIG MKSGLNSASA  300
RSDSMGIKNK GEASTSTNPA ESTLVNSSGE CSKELEMRCH KVVEKSKADL KPLQPKSLEL  360
NTLASKQSEP ACKENGIKND QRSNQVLGDG GAKGQTGAEK GMEAAVASSS ICSGNGADRG  420
SDDQNRDLKR KSRDTEDSEC HSEDVEDESV GVKKGGSGRG VAGSKRSRAA EVHNLSERRR  480
RDRINEKMRA LQELIPNCNK VDKASMLDEA IEYLKTLQLQ VQMMSMGAGL YMPQMMLPGG  540
MQHMHAPHMA AFSPMGIGMH MGLGMGYGMG MPDMNGGSSR FPMMQMPPQM QGTHIPVAHM  600
SGPSAIHGMA RSNPQGFGLP GQGASMPMPR GHGFPFPGGP LMNSAYGSTG TVETVNPASA  660
SGSRDPXXXX XXXXXXXXXX *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1476481ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA36094
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2328690.0AC232869.5 Medicago truncatula clone mth2-13n12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591254.10.0transcription factor PIF3
RefseqXP_024638901.10.0transcription factor PIF3
TrEMBLA0A2K3NQE80.0A0A2K3NQE8_TRIPR; Transcription factor PIF3-like protein
STRINGAES615050.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-53phytochrome interacting factor 3