PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35992
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 300aa    MW: 34893.1 Da    PI: 9.2621
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35992genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.31.3e-2168122255
                    G2-like   2 prlrW..tpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                +r+ W  +peL ++F+ av+qL G+ekAtPk+i elm+v gL  +hv+SHLQk+Rl
  Tp57577_TGAC_v2_mRNA35992  68 NRVSWvsSPELQAKFLIAVNQL-GIEKATPKKITELMDVRGLETSHVASHLQKFRL 122
                                688896679*************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-2065123IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1867123IPR006447Myb domain, plants
SuperFamilySSF466891.13E-1167123IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MMGVDDTTSE RMNEACDYWT KPLNPNYIKN MWQHVAKVQH DQIERVSEVV KTGQKRKKRD  60
EESETKNNRV SWVSSPELQA KFLIAVNQLG IEKATPKKIT ELMDVRGLET SHVASHLQKF  120
RLRHFNCSSS KKTKPKSGRE NSNVPHESIQ VVESMPKQDK KCDSNFLHAQ QQHPIPMVFD  180
DFEVSNILTN KTNMMVDVSS SLYEQAWYPF EELAELMLKK MEQVVRPQQR ETYHCLLSLY  240
GGTGNVTEVY RVWRTLKTVS LMTNRSYLIM LSTLRKLNDM EGIIKLFKEW ESRLMVLMS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35992
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1600979e-68AC160097.28 Medicago truncatula clone mth2-182a12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3LYW71e-117A0A2K3LYW7_TRIPR; Response regulator receiver domain protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.16e-19response regulator 1