PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA35974

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 434aa MW: 48082.9 Da PI: 7.4368

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA35974	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6.2e-39	102	161	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Tp57577_TGAC_v2_mRNA35974 102 PDKIVQCPRCKSWDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 161 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	96	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-31	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.922	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MNMSETEKNP GIRLFGWKIP VPECQIPTNS GPMDTCSSTK KTEVEILCAE KSEQQDNSSD 60 SMDSKQETHH DMQEKEPIVN SKSADDNTES GNTDDEKILK KPDKIVQCPR CKSWDTKFCY 120 FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LASQYRQIIV TSDGIPTSRL 180 ETIPSSTHHT STDNETVLKF GPDTPLCESM ESMLHLKDQK RSSDANSISC VQHREEPSLY 240 GSSVTNTNTQ XXXXXXXXEH NASNWLQCYP VPPWVLPMNP GWNMNNVASM AAVHPTSASM 300 CNPYSVAPTT MQWCPTPMLA IPGIRPQNIP LQLVPASNWS RPSLCLSPPS STSNSCCTGN 360 GSQTLGKHTR DTVFTDQDKS DKSVPVRKTI RINVTNEGPI SPIRATLANK TPTQILEANS 420 AAISHAHTIQ ESI*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MNMSETEKNP GIRLFGWKIP VPECQIPTNS GPMDTCSSTK KTEVEILCAE KSEQQDNSSD  60
SMDSKQETHH DMQEKEPIVN SKSADDNTES GNTDDEKILK KPDKIVQCPR CKSWDTKFCY  120
FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LASQYRQIIV TSDGIPTSRL  180
ETIPSSTHHT STDNETVLKF GPDTPLCESM ESMLHLKDQK RSSDANSISC VQHREEPSLY  240
GSSVTNTNTQ XXXXXXXXEH NASNWLQCYP VPPWVLPMNP GWNMNNVASM AAVHPTSASM  300
CNPYSVAPTT MQWCPTPMLA IPGIRPQNIP LQLVPASNWS RPSLCLSPPS STSNSCCTGN  360
GSQTLGKHTR DTVFTDQDKS DKSVPVRKTI RINVTNEGPI SPIRATLANK TPTQILEANS  420
AAISHAHTIQ ESI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA35974

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003624725.3	0.0	cyclic dof factor 1
TrEMBL	A0A2Z6MY49	0.0	A0A2Z6MY49_TRISU; Uncharacterized protein
STRING	AES80943	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-45	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA35974