PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA35910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 25129.8 Da PI: 6.254 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.3 | 0.00065 | 29 | 78 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r + erE+ R+++N+ f L +l + + + Ka+iL +A + +k+L Tp57577_TGAC_v2_mRNA35910 29 KRIHKAEREKMKREHLNELFLDLANVLDLN----EPNNGKASILCEASRLLKDL 78 688899*******************99886....57788899998888888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.64E-5 | 26 | 83 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-10 | 26 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-5 | 28 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.226 | 28 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGSESIAPMV ETSKNRSSPG TVNQGKVPKR IHKAEREKMK REHLNELFLD LANVLDLNEP 60 NNGKASILCE ASRLLKDLLC QIQSLKKENV SLLSESHYVT MEKNELKEEN GSLETQIEKL 120 QGEIQAKMAQ SKPDLNVPPH LELELPELTK FPGHAFQMPT IEPTLQQGPA VLVVPFRPDL 180 QAAFPAPNVT ELTPKPAPGI SKPHARYPTP ADSWPSQLLG EQPTSNL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA35910 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508752.1 | 1e-137 | transcription factor bHLH47 | ||||
Refseq | XP_027192932.1 | 1e-137 | transcription factor bHLH47 | ||||
Swissprot | Q9SN74 | 7e-63 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | A0A2K3PKE4 | 1e-162 | A0A2K3PKE4_TRIPR; Transcription factor bHLH47-like protein | ||||
STRING | XP_004508752.1 | 1e-136 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8223 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 3e-63 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA35910 |