PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA35878 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 212aa MW: 23678.8 Da PI: 6.8718 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.3e-09 | 24 | 46 | 22 | 45 |
T-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwq 45 +tW+tIa+ ++ +Rt++++k++w+ Tp57577_TGAC_v2_mRNA35878 24 PTWSTIAALLP-RRTDNDIKNHWN 46 59*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.79E-7 | 24 | 58 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.1E-10 | 25 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.4E-6 | 25 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.98E-5 | 26 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MSLPSSIIHS VQRTSLNSTL ISLPTWSTIA ALLPRRTDND IKNHWNANIK KRLIKMGIDP 60 TTHKPKSNIK DNINIALKHK AQWESVRLET EARSSMLGKI QTQPLICSSS SPNFSITNHN 120 NAMDNMCAIM FANDDVDPLF PMHCNVTYNN TNNIMETSGQ EIMHSYASNL QGDDDIMVAL 180 EAFRDSFNVD TFMDFNGNGM CKFDAGYAFS K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA35878 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003613875.3 | 5e-62 | transcription factor MYB16 | ||||
TrEMBL | A0A2K3MR36 | 1e-134 | A0A2K3MR36_TRIPR; MYB transcription factor | ||||
STRING | AES96833 | 2e-60 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13536 | 8 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 6e-24 | myb domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA35878 |