PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35797
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 126aa    MW: 14382.1 Da    PI: 4.1418
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35797genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.5e-091965347
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                                W+ e+ +++ +a  + + +   +W++ a++++ g+++ ++k+++q++
  Tp57577_TGAC_v2_mRNA35797 19 QWSREDAKIFERALLMVPENspnRWEKMAEKVP-GKSAAEVKDYYQDL 65
                               6*****************99*************.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.6321266IPR017877Myb-like domain
SuperFamilySSF466895.02E-101567IPR009057Homeodomain-like
SMARTSM007172.5E-81668IPR001005SANT/Myb domain
PfamPF002493.2E-71965IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-51966IPR009057Homeodomain-like
CDDcd001678.79E-72066No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MYQNTIDMAT AATTRSPTQW SREDAKIFER ALLMVPENSP NRWEKMAEKV PGKSAAEVKD  60
YYQDLVHEIS EIESGRVEIP IYPDDLDESD DLAESGGSGL FDSLKETPWT KEEQRYLLVL  120
FILFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35797
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470249.19e-32transcription factor DIVARICATA
TrEMBLA0A392SNG03e-38A0A392SNG0_9FABA; Transcription factor DIVARICATA-like (Fragment)
STRINGAES843683e-31(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.17e-22MYB family protein