PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA35786 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 243aa MW: 27245.6 Da PI: 9.2438 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.3 | 2.6e-43 | 46 | 145 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk++rrkC+++C++apyfp ++p+kfa+vhk+FGasnv kll++++ ++reda++sl+yeAear+rdPvyG+vg+i++lq Tp57577_TGAC_v2_mRNA35786 46 PCAACKIQRRKCTQECIFAPYFPPDNPQKFAYVHKVFGASNVAKLLNEVNISQREDAVKSLAYEAEARLRDPVYGCVGLISHLQ 129 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 +l+ l++el+ +k+e Tp57577_TGAC_v2_mRNA35786 130 TKLRDLQNELVNAKKE 145 ***********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.984 | 45 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.0E-43 | 46 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
LQQHIQITNK STTITISFSL HQHNNNNIVF SGTTITIMSS WNNNSPCAAC KIQRRKCTQE 60 CIFAPYFPPD NPQKFAYVHK VFGASNVAKL LNEVNISQRE DAVKSLAYEA EARLRDPVYG 120 CVGLISHLQT KLRDLQNELV NAKKELASFH SPPQPPLLLP PAAATGSSYF SFGSSSAQQR 180 HHEIFNFSGN NNNINNSFSS FQMHPFQNQL MISSSSSSQP QTQIHNQFFS KKMLKEERQN 240 LD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-46 | 39 | 149 | 4 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-46 | 39 | 149 | 4 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA35786 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024634719.1 | 4e-77 | LOB domain-containing protein 11 | ||||
TrEMBL | A0A2K3MUV2 | 1e-104 | A0A2K3MUV2_TRIPR; LOB domain-containing protein 36-like | ||||
STRING | XP_004515644.1 | 1e-71 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 1e-56 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA35786 |