PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35697
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 268aa    MW: 29955.2 Da    PI: 5.3737
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35697genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-094282348
                               -HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                               +W++Ia +++ gRt++++k++w+++l
  Tp57577_TGAC_v2_mRNA35697  4 RWSAIATHLP-GRTDNEIKNFWNTHL 28
                               4*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.319132IPR017930Myb domain
CDDcd001673.82E-8228No hitNo description
SuperFamilySSF466897.02E-9337IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-14329IPR009057Homeodomain-like
PfamPF002491.3E-7428IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
LFNRWSAIAT HLPGRTDNEI KNFWNTHLKK KLIQMGFDPM THQPRTDLVS TLPYLLALAN  60
MTELMDHHQS WDEQQTAMSS LQAEAVHLAK LQCLHYLLQS SNSSLNINNN INNTNNSSYD  120
QNAIITNMEQ EPLSLLNTIS NVKQNTIIDH AATFSSSQPL HHQSMIPHDH FLDPQQVSFS  180
SQSCLNNEQG QNGTITNYAM LSQRNQDYPT VDHETSWINV PSSAPLSIPT NAITGDASSC  240
TSSYGGTPSA PYWSELFFED PIMHDLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35697
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460901.11e-117transcription factor MYB93
TrEMBLA0A2K3MYX50.0A0A2K3MYX5_TRIPR; Transcription factor MYB 39-like protein
STRINGGLYMA04G11040.11e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.16e-41myb domain protein 93