PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA35565 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Dof | ||||||||
Protein Properties | Length: 279aa MW: 30332.6 Da PI: 10.1188 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.7 | 6.2e-39 | 73 | 133 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++lkcprCdstntkfCy+nnysl+qPr+fCkaCrryWt+GGalrnvPvGgg+r+n+k++ Tp57577_TGAC_v2_mRNA35565 73 PEQQLKCPRCDSTNTKFCYFNNYSLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNNKKN 133 6899****************************************************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-32 | 57 | 126 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.9E-32 | 75 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.478 | 77 | 131 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 79 | 115 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MIFSSIQGYV DPPNWHNQQP NQHQQNGSDN IQLLPPLPPQ VGGSTGASGG GTMGSIRPSS 60 MAERARSAKL PPPEQQLKCP RCDSTNTKFC YFNNYSLTQP RHFCKACRRY WTRGGALRNV 120 PVGGGCRRNN KKNKRSRSKS PNSTNSHEKQ TSSSSAIPSH HELIGHQLPQ TITNLPFMAS 180 MQNHLSRYVV GNVNMGLGLR EIQEQQQQTD HMGFQIGVGN GNGNSSVTVS AAAAGGGVGV 240 DQWRNLQQFP FLNTFESTSG GNNSFPFQGE SIEATSSGF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA35565 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013456108.1 | 1e-147 | dof zinc finger protein DOF3.6 | ||||
TrEMBL | A0A2K3N8E6 | 1e-156 | A0A2K3N8E6_TRIPR; Dof zinc finger protein | ||||
STRING | XP_004505871.1 | 1e-125 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02460.1 | 9e-42 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA35565 |