PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35471
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 292aa    MW: 34040.2 Da    PI: 9.1991
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35471genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.6e-1445103148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...........TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...........kgRtlkqcksrwqkyl 48 
                                +g+WT++Ed +lv  v ++G ++W+ Ia+  g           ++Rt+k+c++rw +yl
  Tp57577_TGAC_v2_mRNA35471  45 KGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGlkfnhlnffvgLNRTGKSCRLRWVNYL 103
                                79*******************************************************97 PP
2Myb_DNA-binding50.74.1e-16109154148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg++T+ E+ l +++  ++G++ W++Iar+++ gRt++++k++w++++
  Tp57577_TGAC_v2_mRNA35471 109 RGKMTPHEERLVLELQSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 154
                                89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.72640103IPR017930Myb domain
SuperFamilySSF466892.13E-2743150IPR009057Homeodomain-like
SMARTSM007171.0E-1244105IPR001005SANT/Myb domain
PfamPF002493.8E-1345103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-1846110IPR009057Homeodomain-like
CDDcd001671.34E-847103No hitNo description
PROSITE profilePS5129425.799104158IPR017930Myb domain
SMARTSM007178.6E-16108156IPR001005SANT/Myb domain
PfamPF002499.4E-14109153IPR001005SANT/Myb domain
CDDcd001676.67E-11111154No hitNo description
Gene3DG3DSA:1.10.10.601.5E-22111157IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSMRNHLYDS ISKIKHKNKK KKNFQLQELV YFGGKKMVQS DEVRKGPWTE QEDFKLVSFV  60
GLFGDRRWDF IAKVSGLKFN HLNFFVGLNR TGKSCRLRWV NYLHPGLKRG KMTPHEERLV  120
LELQSKWGNR WSRIARKLPG RTDNEIKNYW RTHMRKKAQD KKKGSSVPST EHHAMNSQAS  180
KEAGEEISFY DTGGSTISNQ KNQIKQVGEE HEQEISMDDI WKDIDLSEEN SLHNEDTGCN  240
NNNNNNISYL PKTSQSWEYN STDSLWVMDA ESMLFPEVPM IDDPYFSCYT N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-26421581105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-263815851159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-263815851159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35471
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597326.21e-136transcription factor MYB48
SwissprotQ9LX822e-81MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2K3NZI61e-174A0A2K3NZI6_TRIPR; Transcription factor MYB 59-like protein
STRINGAES675771e-137(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.12e-83myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]