PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA35449

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 350aa MW: 40243.8 Da PI: 9.1456

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA35449	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.2	6.7e-24	60	147	1	90
FAR1 1 kfYneYAkevGFsvrkskskksk.rngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn YA +GFs+rk+ +ksk +n+++++r+f C keg+++ ++ + + +r+ rtgC a++++++e +gk++vt++++ Tp57577_TGAC_v2_mRNA35449 60 RFYNVYAGFAGFSIRKDWRNKSKlDNETVMSRKFACFKEGFKKIKDYD---DKVSRKDIRTGCLAHVVISRELSGKYVVTSFVK 140 5***************999962667799**********9988...889999*********************** PP FAR1 84 eHnHela 90 +HnHela Tp57577_TGAC_v2_mRNA35449 141 DHNHELA 147 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-21	60	147	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.0E-24	269	349	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MENSSFSPNN VNEPLGSEDK SPVSLNSNVK WNDNIERELT KEDIIPYVGM KFDTEDHAYR 60 FYNVYAGFAG FSIRKDWRNK SKLDNETVMS RKFACFKEGF KKIKDYDDKV SRKDIRTGCL 120 AHVVISRELS GKYVVTSFVK DHNHELASPR SKHKLPSQRR VSAAQAAEVE MANRSGIRQK 180 LIFEFISQHV GGRENVGCTS KDISNHLTAK RMKEMKEGEA YTLLHYFKSK QTENQSFFYD 240 IQLDVDKQIT NIFWADAKMV LDYVYFGDVV CFYTTYRTNK NLRPFAPFIG FNHHKESVLF 300 GAALLYDETA ASFEWLFKTF LKAMCGKKPK TIFTDQDPAM AKAISEVFP*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MENSSFSPNN VNEPLGSEDK SPVSLNSNVK WNDNIERELT KEDIIPYVGM KFDTEDHAYR  60
FYNVYAGFAG FSIRKDWRNK SKLDNETVMS RKFACFKEGF KKIKDYDDKV SRKDIRTGCL  120
AHVVISRELS GKYVVTSFVK DHNHELASPR SKHKLPSQRR VSAAQAAEVE MANRSGIRQK  180
LIFEFISQHV GGRENVGCTS KDISNHLTAK RMKEMKEGEA YTLLHYFKSK QTENQSFFYD  240
IQLDVDKQIT NIFWADAKMV LDYVYFGDVV CFYTTYRTNK NLRPFAPFIG FNHHKESVLF  300
GAALLYDETA ASFEWLFKTF LKAMCGKKPK TIFTDQDPAM AKAISEVFP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA35449

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023905020.1	1e-156	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2N9HUX8	1e-157	A0A2N9HUX8_FAGSY; Uncharacterized protein
STRING	OS01T0852650-00	1e-111	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-75	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA35449