PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA35367 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Nin-like | ||||||||
Protein Properties | Length: 914aa MW: 101743 Da PI: 4.961 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.2 | 3.9e-29 | 576 | 626 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Tp57577_TGAC_v2_mRNA35367 576 EKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKV 626 79***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.166 | 565 | 646 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.0E-26 | 578 | 626 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.92E-21 | 821 | 908 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.3E-21 | 822 | 904 | No hit | No description |
PROSITE profile | PS51745 | 20.526 | 825 | 907 | IPR000270 | PB1 domain |
SMART | SM00666 | 3.4E-19 | 825 | 907 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.4E-15 | 827 | 906 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 914 aa Download sequence Send to blast |
MNMEDQFSSK DNGISFWTPL DNGMKSSITS DDMFNNISEL MNFDNYAGWC NGSSSLIDQT 60 LTSDLSSFAY SPHDGLSLVE QINGPFFMTD IGGNYSTTSY EEKVLLQQME TQFAFVDNAN 120 ETNNNNLDSQ FDMCNYVMSK SPSWSLDERM MSALSFFKES AGGGILAQFW VPIKYGDEIV 180 LTTSNQPYLL DQKLAGYREV SRSFTFSAEI KMGACCPGLP GRVFISHVPE WTSNVGYYHK 240 SEYLRLDHAI SHEVRGSIAL PISDMNSEVS CSAVLELVTT KEKPNFDKEL EYVSHALQRM 300 NLRTITPPRL LPQCVSNNKR AALAEIVDVL RAVCHAHRLP LALTWIPCYY SEGKGEESER 360 LRIKEGRTTN SDEKCVLCIE ESACYINDKM VEGFVHACSE HHLEEGQGIS GKALQSNHPF 420 FYTDVKAYDI SEYPLVHHAR KYNLNAAVAT RLRSTYTNDD DYVLEFFLPI DMIGSSEQQL 480 LLDNLSDTMR RICKSLRTVS EGELRGIEVS QDGFPKENIS GFFPMSKGNS QIAFSTGDPD 540 LFQMPLMAAN NGIQGSHSQV TSESRKQAEK RRNAVEKNVS LSVLQQYFSG SLKDAAKKIG 600 VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVLDSV QGVEGVLKFD PHTGGFVAGG 660 SIIEQIGTCN KNLMFPEKSS VENSAIKLED DGVLISNSCE GDLKKDNNAS SDDYIQDSTS 720 WLWTKTHECP KQNSIDSVLE KEEDQCGLNN SSLHDIASNS SFSLIELGLD EGKGLDEPNH 780 PTSSSMTDSS NASGSMVRGS SSGSQSIENH KNSKIKSICV DSESKFAVKA TFRGDTIRFK 840 FDPCLGCFQL YEEVATRFKL RNGSFQLKYL DDEEEWVLLV NDSDLKECVE VLSDSGTYCV 900 KLLVRDIHGD GNS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA35367 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636796.1 | 0.0 | protein NLP9 | ||||
Refseq | XP_024636798.1 | 0.0 | protein NLP9 | ||||
Swissprot | O22864 | 0.0 | NLP8_ARATH; Protein NLP8 | ||||
TrEMBL | A0A2K3PI51 | 0.0 | A0A2K3PI51_TRIPR; Protein NLP8-like | ||||
STRING | AES89009 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3464 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA35367 |
Publications ? help Back to Top | |||
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