PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA35341

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 272aa MW: 30704.4 Da PI: 5.2829

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA35341	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.7	2e-28	104	191	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn+YA evGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a+++++k ++gkw++tk+++eH Tp57577_TGAC_v2_mRNA35341 104 FYNAYAAEVGFIIRVSKLSRSRRDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEH 185 ****************************************9988..9******************************* PP FAR1 86 nHelap 91 +H+l+p Tp57577_TGAC_v2_mRNA35341 186 THPLNP 191 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-25	104	191	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MFLQLSSKVE LGIDGSVNGD AVRDAIDAVR DAVMVEVSSI PYENIEEESS AEPTYKQDQD 60 DNVTQDSSGG ALTIPSAVPT LPDGSADEPY VGQEFESEAA AHAFYNAYAA EVGFIIRVSK 120 LSRSRRDGTA IGRALVCNKE GYRMPDKREK IVRQRAETRV GCRAMIMMRK INSGKWVITK 180 FVKEHTHPLN PGSNRRDCMF EQYPSQNEHD KIRELSQQLA IEKKRSVTYK RQLEVIFDYI 240 EEHNVTLSHK IQHIVDSVKQ MEPKEEEEDN H*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA35341

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456303.1	1e-156	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_024637682.1	1e-156	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_024637683.1	1e-156	protein FAR1-RELATED SEQUENCE 7 isoform X1
TrEMBL	A0A2K3P858	0.0	A0A2K3P858_TRIPR; Protein FAR1-related sequence 6-like
STRING	XP_004507429.1	1e-134	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	5e-93	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA35341