PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35301
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 724aa    MW: 83355.5 Da    PI: 8.6224
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35301genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.28.7e-2122107290
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                                f+ +Y+  vGF vrk++ +k+ ++g+  +  fvC kegkr ++k++  k +++r+etrt+C+a lk+k+  dgk++v+++++eH
  Tp57577_TGAC_v2_mRNA35301  22 FWVNYGGIVGFGVRKNYIHKK-KDGSPSSCAFVCCKEGKRMSDKRD-YKIKNPRPETRTNCQAGLKLKNV-DGKFVVYDFVEEH 102
                                9***************99887.8889*****************999.9********************99.************* PP

                       FAR1  86 nHela 90 
                                nH l 
  Tp57577_TGAC_v2_mRNA35301 103 NHILH 107
                                **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-1622106IPR004330FAR1 DNA binding domain
PfamPF105512.5E-21197269IPR018289MULE transposase domain
PROSITE profilePS509669.804456492IPR007527Zinc finger, SWIM-type
PfamPF044344.8E-5457490IPR007527Zinc finger, SWIM-type
SMARTSM005756.9E-4467494IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MNEDWKPKVD MIFGSVEDAW TFWVNYGGIV GFGVRKNYIH KKKDGSPSSC AFVCCKEGKR  60
MSDKRDYKIK NPRPETRTNC QAGLKLKNVD GKFVVYDFVE EHNHILHTSE TTHMLSSQRK  120
ISDIQCQQIE LADTAGVQQR KSFNLLSKEV GGRTNLGFTR LDQKNYLRGK RKKSLVQGEA  180
GYLLQYFQRK SVENPRFNHH RGAVVFGAAL LYDETAESYK WLFETFLEAH KQKRPQTVFT  240
DQDQAMAKAL VEVMPGTYHG LCTWHLMQNA IKHCANYMKG KSHFLSDFKK CIYGYEDEEQ  300
FEKGWTTLLV EYEAEEDKWL QRAYNIKEKW ASCYMNKALT LGMRSTQLSE SVNADIKNFM  360
NTKLDIIKFF QRFEDVVEEK RYKELKCEFE TRQKIPRLKN SYSDILQQMS ELYTPTIFDL  420
FQQQYELFEA CIVKSMNIQT SSINYVIAMT KYSGEWQVDY DLENKSICCS CRKFESFGIL  480
CCHCLKVFIH MDVTSVPEAY ILKRWTKIAR SGDLHNSGVS GVAEDLDLSP TQRYQKICSR  540
YIRIITEGLS EAFMFLNEVA DELDDEMVKF QNMQISNDQV NGTSNKDKEI ASTNDGSTQV  600
TRLAQKEGRK GSKRLKGWVS KLAKRRKRGE SNASQIEKPV KNKSKRASKN IETQYEVSHT  660
SASQSQKQDA VSNTSAPTWL NNEYNQVSME NTGTSSQFSG ATSFTSLLMA QHDNIIDLTN  720
PQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35301
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630666.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024630798.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A151RX650.0A0A151RX65_CAJCA; Protein FAR1-RELATED SEQUENCE 5
STRINGXP_004490690.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-82FAR1-related sequence 5